Acep007565.1
Basic Information
- Insect
- Atta cephalotes
- Gene Symbol
- -
- Assembly
- GCA_000143395.2
- Location
- NW:2446410-2451373[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.14 8.2 6.3 3.1 1 23 397 419 397 419 0.97 2 19 0.00064 0.037 13.7 0.6 2 23 456 477 455 477 0.97 3 19 6.9e-05 0.004 16.7 1.2 1 23 544 566 544 566 0.97 4 19 0.00087 0.05 13.3 1.0 1 23 569 591 569 591 0.97 5 19 5.3e-07 3.1e-05 23.4 1.0 2 23 638 660 637 660 0.97 6 19 0.018 1 9.2 2.9 1 23 666 688 666 688 0.95 7 19 0.0005 0.029 14.1 0.7 1 20 694 713 694 718 0.94 8 19 0.00016 0.0091 15.6 2.4 1 23 785 807 785 807 0.97 9 19 0.0003 0.018 14.7 4.7 1 23 856 878 856 878 0.97 10 19 0.00035 0.02 14.5 0.6 1 20 883 902 883 904 0.94 11 19 0.037 2.1 8.2 0.3 2 23 915 936 915 936 0.97 12 19 2.3e-05 0.0013 18.3 0.6 2 23 975 996 974 996 0.97 13 19 2e-05 0.0011 18.5 1.5 1 23 1001 1023 1001 1023 0.95 14 19 0.0013 0.074 12.8 1.8 1 20 1029 1048 1029 1051 0.93 15 19 6.1e-06 0.00035 20.1 0.5 1 23 1067 1089 1067 1089 0.95 16 19 3e-07 1.7e-05 24.2 0.6 1 23 1095 1117 1095 1117 0.99 17 19 3.2e-05 0.0019 17.8 0.2 1 23 1123 1145 1123 1145 0.97 18 19 0.019 1.1 9.1 6.9 1 23 1151 1173 1151 1173 0.96 19 19 0.0041 0.23 11.2 0.6 1 20 1179 1198 1179 1200 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGCGATACATACGTCGGATCCACCGCAGGGCGAGGACGCGATCACGTCCGCTATGAAGATATGCCGCATCTGCCTGCTCGACAATCTGATGATGCGCGATCTCTTCGCAGAGAGCGAGGTCGCGTCCCTATCGGTGAAGGCGATGAGCTTCGCCAACGTTAAGATGTTACCAGGTGATGGTTTACCAACACAGGTGTGTTGTATGTGCGCTGACAAGTTGGAATCGGCATACGAGTTTAAGTTACAAGTGGAGCAAGCTGACAATGTTCTTCGAGAAAAGCTTGTGGGAGGAATAATAAAGGATGAATTGTTTCTTAATGAAGTTGAAATACACTTGGATGCCGAGAAGAATAATGGTTTGGAAGAAATGAATGACAGTGCTGATTATGAATCTACTGATACATTGCCAGTTGAAACAGAAACTGACAAGAACTTtctgaaaaatcaattaattattttggaagCTGAAAAATTGGCAGAGACAGATGGAATGCAAGATTCAGAACAAGATAACTTGCAAGAAAGTATTGAGGAAGAATTGCAGCAAGAATTAGCCAACTCGGAAGACAATGATATGTCAGATGCTATTGATGAATCTAGGGATGAAATATCTTCCAACGACAAGAATATTATTCGAAGTTGTACAGATACAATTCCAACAGaagaacataattatataatgcaacAACAGTGTATTATCTTGCATACTGAACAATTCTCCttccataaaaaaatgcaGGAGACCGTACCAGAATTTAAACATGATATAACGGAATACAAAGAGTCGCTATCTGaacaaaatcaagaaaatcaaTCTGAGCAAAACGAAGAGATTCAGGcacaaaatcaagaaatttcaaCTCAGCAAATTCACGAGACACTAGCTGAGCAAACTGAAGAGACTCCAGTTCAAAATGCTCAAGCTGAACAGGAGAATCAAACTgaacaaaatcaaaataaaaaaatggaattattacagaatgaagtattaaaaaatgatactaaTGAGCCAGTCGTGGAACAAGAATCACCTCAGAATGAAACTAGAAGAAGTAAACGTAAATTGGCTCGTCGGATATTCACCGAGCGGGATTCCGATGAGGAGAATTActttgaaaatctgaatctcAGTTCACGATTGAAAAAAGCGCAGGCAGATAAGACAGAGAAGATCTTTTTCATGTGTTACTTGTGCGATAAACAGTTTCTTTCAAAGAGCATCTTGAAAGAACATATGCATTCCCATGAAGAAGTAAGGAAAACATTGTCTCTGAAGAAAACACCGGAGAAACCGCAGAAGGTGCAGACCAGCGTTTCCGCTGTGAAAACACCGGAATCAGGAAGAAAAGCCAACAAGTGCCCTTATTGTGGTAAAGAATACATGTACATAATCTCGTTTACTAAACACATTAAACAACACGAACGAGAGGGGCAGGAAGCGAAGGAAGATTCGATGTCATTTGAGATGTTTCATGAGGATGAATACAGTCTAGACTTAGATAACGGCAACAAATCGGATGTTGAATGTAGAAAACAAAAGAGAGGAAGTATAGTCGACGACATTGCAAGCGACAATGATCAGGATAAAAAAGCGATAAGAAAGCGTAGTCTTGAggaatttatatgtaacaaatGTCCAGAAAAATTCGATACAAAGCGAGGCTTGCAAAAGCATTCGCTCACGCATGTTAGCTTCAACTGCAGCGTGTGCAACGAGGAATACGACACTCTAGAACAACTAAAAAATCACCGAACAAAGCATGTGGTCGAAGGCGTACTCACTGAACAAGACTTGGAAGAGGATATGAAGCAAATTACCAAGTGCGAAGAGAATGATGATAACAGCAAGAACATCAAAGATGGAGAGAACAGTGAATCCGCCGAAATTACGAAGGAATTAAAGTGTCCGATATGTTCAATAACATTCTCACGCAAGAAAGCACTCTCCAGACACATGCAGACAACACACTCCGACACCCATTCTTACGAATGCAAGATATGCTGTCAACAATTTGCACGGAAGGATTTCCTACGCAGACATGCCGAGCAGCATGCACGAGTGAAGACTTACAAATGTACTCAATGTAATAAAACCTTCGGCAATGAGCTCACATTGAGAAATCATTTGGTTGCCACAAATCATAAGACATTTATACAGGGACAGGAATACGATCCCAACAAGCGTATAAAGCGCGTGGCGGCGAGAGCAGCACAGAAAATCATCGACAAGATCAAGACTGAGGACGGTCTCGAAGATTACGATGATAATACCGATTACGATGTTAAATTGGACAAGCATTATGTCATTAAGCACGACGCAAAGAAGTACAGATATAAGGAATTTGAGTGTACGATCTGTAATAAGAGGTACTGTTTGAAACAAGCATTGGTGAGGCACATGGAGCAACATGTAAAGAAGGAAAAGGCAGAGAAAGCAATGGAGAAAGCGGTGGAGAAGCAGAAGAAGGAAGCGCAGAAGAGCAACACGAACGATAACGACGACGGCGATACCAACTCCGACTTTGAAAGTGGTCTTGACTGGCCAGTAGACAGCCATGAATGCACCACGTGCAAGAAGCAATACAGTACGAAGAAGTCGTTACTGCGCCATCAACTATTACATGAGGAGCCAAATTTCGAGTGCGATATCTGCAGTATCAAGTTCTATCGAAAAGACAAACTAAAGGCGCATTATGATAAGTGCGCGGAAAAAAATCCTGATCAGGTGAGGAAATGCAACATCTGCGGCGACAGTTTCGAAAACAATGAGATTCTGCGCGAGCACAGGGCCAAGCACGTCACCGAGGGCATCTTAACGGAGGAGGATCTGAGAGACACCGAGCCAAAATCCGAAGAAAAGAGactaaatgataaaatgaccCGGAAAAGGAGGACCGATATTGTGGGACTCGAGTGTACCGAATGCAATAAACAATATACCTCTAGGAAGGGCCTGTTGCGACACATTCAGGTTCACGAGGGCAAGAAGTACCTATGTGAAATATGCCCGAAGAAATTCTATCGGCGAGAACACCTGAAGATTCACGTGGCAAAACACAACATGATCAAACCATTCAAATGCACTCGTTGCTCCAAACGTTTCATTAAGGAGGAACAGCTCAATAACCATCTACCTAAGCATGATCGCACTTTTAAGAAGAACAAAGAGACCGATAGCTCGAAGAGATTCCTCTGTGAAATATGCAGCAAGAGCTTTACGCAGTCGACAACGTTGCTAGCGCATCTGCGCGCTCATAAGGGTATCAAACCGTATGTGTGCGAAGTATGCTCCAGACCATTCACCACTAATGCCTACTTGAAGATGCATatgcgcacacacacgcagGAACGTCCGTACATCTGTCAATATTGTTCGCGAGCGTTTGCCCGTGCTGACACCTTGGCAAATCATTTGACGTCGCACACTGGCGAAGCCAAGTACCACTGCAAGTGCTGTCCGAAGAACTTCCGGCGATTGAAATCATTAAAGGAGCACATGTTTATTCATACGGGTCAACGACCTTACGAGTGTCCAACTTGCGACAGAAAGTTTAACAATAACGGCAGTCGCTACGCGCACAGCAAGCGTTGCAAACAGAATCTTTTGCAGACTCAGAACCGGGCGCAACAGGTGATTCAGCAGacacagcagcaacagcaacaacaacagcTACAACATCAACATCAGCCACAGCAAGTGCAAATACAGATGCAATCAGAACCGCATCCAGTTAGGTTGCATCAAACCACGATCGGCCAGGCACAAGTAATCAAGGCGCAAAACATTAAAACAATCGCTATAGCGAGACAAGCTGAGCCTACGGTAACCACGCAACATCAGGTTATGCAGCATCAGGAAATACTAATGCCTTTAATCCTGCCACTTACCGTTACTCTTGCTGATGTAGGCGAAGAGGTGATACTACCTGAAGGTACAAAAATATTCACCACTTCTTAA
- Protein Sequence
- MDAVAIHTSDPPQGEDAITSAMKICRICLLDNLMMRDLFAESEVASLSVKAMSFANVKMLPGDGLPTQVCCMCADKLESAYEFKLQVEQADNVLREKLVGGIIKDELFLNEVEIHLDAEKNNGLEEMNDSADYESTDTLPVETETDKNFLKNQLIILEAEKLAETDGMQDSEQDNLQESIEEELQQELANSEDNDMSDAIDESRDEISSNDKNIIRSCTDTIPTEEHNYIMQQQCIILHTEQFSFHKKMQETVPEFKHDITEYKESLSEQNQENQSEQNEEIQAQNQEISTQQIHETLAEQTEETPVQNAQAEQENQTEQNQNKKMELLQNEVLKNDTNEPVVEQESPQNETRRSKRKLARRIFTERDSDEENYFENLNLSSRLKKAQADKTEKIFFMCYLCDKQFLSKSILKEHMHSHEEVRKTLSLKKTPEKPQKVQTSVSAVKTPESGRKANKCPYCGKEYMYIISFTKHIKQHEREGQEAKEDSMSFEMFHEDEYSLDLDNGNKSDVECRKQKRGSIVDDIASDNDQDKKAIRKRSLEEFICNKCPEKFDTKRGLQKHSLTHVSFNCSVCNEEYDTLEQLKNHRTKHVVEGVLTEQDLEEDMKQITKCEENDDNSKNIKDGENSESAEITKELKCPICSITFSRKKALSRHMQTTHSDTHSYECKICCQQFARKDFLRRHAEQHARVKTYKCTQCNKTFGNELTLRNHLVATNHKTFIQGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDDNTDYDVKLDKHYVIKHDAKKYRYKEFECTICNKRYCLKQALVRHMEQHVKKEKAEKAMEKAVEKQKKEAQKSNTNDNDDGDTNSDFESGLDWPVDSHECTTCKKQYSTKKSLLRHQLLHEEPNFECDICSIKFYRKDKLKAHYDKCAEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLRDTEPKSEEKRLNDKMTRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCEICPKKFYRREHLKIHVAKHNMIKPFKCTRCSKRFIKEEQLNNHLPKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLLAHLRAHKGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQTQNRAQQVIQQTQQQQQQQQLQHQHQPQQVQIQMQSEPHPVRLHQTTIGQAQVIKAQNIKTIAIARQAEPTVTTQHQVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00016834;
- 90% Identity
- iTF_00014886;
- 80% Identity
- -