Basic Information

Insect: Atta cephalotes
Gene Symbol: lolal
Assembly: GCA_000143395.2
Location: NW:12985-67957[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 3.7e-13 5.3e-10 38.0 0.0 1 39 350 389 350 393 0.90

2 4 2.3e-13 3.3e-10 38.7 0.1 2 39 405 442 404 445 0.94

3 4 8.6e-19 1.2e-15 56.1 0.0 1 45 459 504 459 504 0.96

4 4 6e-19 8.6e-16 56.6 0.1 1 42 511 553 511 554 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	3.7e-13	5.3e-10	38.0	0.0	1	39	350	389	350	393	0.90
2	4	2.3e-13	3.3e-10	38.7	0.1	2	39	405	442	404	445	0.94
3	4	8.6e-19	1.2e-15	56.1	0.0	1	45	459	504	459	504	0.96
4	4	6e-19	8.6e-16	56.6	0.1	1	42	511	553	511	554	0.97

Sequence Information

Coding Sequence: ATGGCCAAAGAAGAACGAAGCCATATTCACAACATATTCGAGAAAATCTATAAAACGGTGGTGTTGTCGGCTTGCAGCTCCTATTTCCAGAAGCTCCTGTTATCGAACCCTTGCAAACACCCGACAATCATCATGCCGCAGGACGTCTGCTTTAACGACCTCAAGTTCATCATCGAGTTCGTCTACCGCGGCGAGATCGACGTTTCGCAAGCGGAGCTTCAGTCGCTCTTGAAGACGGCCGACCAGCTAAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCGCCACCCGTGAGTCTGAGTTCGCCGCCGAGAGAGTCCGGCACCCCAAGATTGAACTACACGAAGCTGAAGAAGCACCATCAGAGATACAAGAGACCCAGACTCGAGCGGCCCACATTCGAGCCGCGTCCTACCGATCCGAGACACTACGATCGCTACAAAGAGGAAGAGGCTAACGATTACAGCCGTGACAATAAAGAGAACCATCGGGACTGGCAGGCTGAAGATGAAGAGTGCACGGAgacagcaacagcagcagtaGCATTGGAAACTTGccaacgtaataataataacaataacaacaacaacGGTAACGGCACGACTAACAACAGTGACATGTTCTGTCACACAGGGCTAGGGCATTATGGCCACCATCCGGATCCCGGAGAGGTCGATTTGCCCCCCGAGACCCAACCCACCCCACCCAGCGCCACCCTGGTCGGCACTACCATCACCCACTTGAGGGATCCGGATCATCATTCTACagAGATTCAGAATTGCGACAGCGTCAAGATCAAGTTCGAAACGTTGCACACGATGGACTCCTCGGACACGATCGACATAGATAGCCATATGTCGGATCGGGCGAGCGTAAGCTCGAAAAACGCTGCCGACAGCGACAACATGATGATGATAACACCGGAGCTATTGGGACTGATGCCATCAGGAAGTTCTGGTCAGTCAGACTCTGGTGAGAATAACTCGAGGGGGCACAGTGGACAGTCCAGTTCGCACCATCACGGTTCAAAGTCGTGGACGCAGGAGGACATGGACGCGGCTTTAGAAGCGCTGAGGAATCACAACATGAGCCTGACAAAAGCTTCAGcaacattCGGTATTCCTTCAACGACACTATGGCAACGGGCGCATCGATTGGGCATCGACACACCGAAGAAAGACGGCCCAACGAAATCCTGGAGCGACGAGAGTTTGAACAATGCCTTAGAAGCGTTGCGTACCGGTTCCATTTCGGCTAACAAAGCATCCAAAGCATATGGCATACCTTCTAGCACGTTGTATAAAATCGCCAGGAGGGAAGGTATCAGATTGGCCGCACCGTTCAACGCGAGTCCCACTACCTGGACACCCTCCGATCTGGATCGCGCTTTAGAAGCAATAAGATCTGGTCAGACGTCCGTACAGAGGGCGTCAACGGAATTCGGTATACCTACGGGGACTCTTTACGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGTAGAAGCAATCCTACGCCATGGAGCGAAGATGCTATGACTGAAGCTCTCGAGGCCGTCAGATTAGGACACATGAGCATAAATCAAGCGGCAATCCATTATAATTTGCCGTATTCGTCACTATACGGACGCTTCAAGAGAGGCAAATACGAGGAACCTGTCGTCGGTGATATCTCGCAAGATGGTACCAGTCCACATTTCCATCAGAGCCCTAACCAGAATCACTCATCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGTTGA
Protein Sequence: MAKEERSHIHNIFEKIYKTVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRLERPTFEPRPTDPRHYDRYKEEEANDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNNNNGNGTTNNSDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPSDLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGTSPHFHQSPNQNHSSALPDQMPYPGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_01520386;
80% Identity: iTF_00181433;