Basic Information

Insect: Atrophaneura dixoni
Gene Symbol: -
Assembly: GCA_018248015.1
Location: DWHX01000100.1:30106-39512[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 8.6e-05 0.014 17.4 0.1 3 23 28 48 27 48 0.97

2 18 7.8e-07 0.00012 23.9 1.2 1 23 54 76 54 76 0.99

3 18 4.9e-06 0.00077 21.4 2.7 1 23 82 104 82 104 0.99

4 18 2.1e-05 0.0034 19.3 3.9 1 23 119 141 119 141 0.98

5 18 7.8e-05 0.012 17.6 0.6 1 23 156 178 156 178 0.98

6 18 3.8e-05 0.006 18.6 2.6 1 23 193 215 193 215 0.98

7 18 3.1e-07 4.9e-05 25.1 1.5 1 23 230 252 230 252 0.99

8 18 0.00014 0.022 16.8 2.8 1 23 258 280 258 280 0.98

9 18 9.7e-06 0.0015 20.4 2.1 1 23 286 308 286 308 0.99

10 18 0.031 5 9.4 1.8 1 23 315 337 315 337 0.98

11 18 5.3e-07 8.3e-05 24.4 2.3 1 23 343 365 343 365 0.99

12 18 0.036 5.7 9.2 1.8 1 23 372 394 372 394 0.98

13 18 2.1e-06 0.00034 22.5 1.5 1 23 400 422 400 422 0.99

14 18 0.00041 0.064 15.3 0.7 1 23 429 451 429 451 0.99

15 18 2.4e-06 0.00037 22.4 1.9 1 23 457 479 457 479 0.98

16 18 0.0017 0.27 13.3 0.3 1 20 485 504 485 507 0.93

17 18 3.2e-05 0.0051 18.8 1.3 2 23 514 535 513 535 0.96

18 18 3.1e-06 0.00048 22.0 1.4 1 23 541 564 541 564 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	8.6e-05	0.014	17.4	0.1	3	23	28	48	27	48	0.97
2	18	7.8e-07	0.00012	23.9	1.2	1	23	54	76	54	76	0.99
3	18	4.9e-06	0.00077	21.4	2.7	1	23	82	104	82	104	0.99
4	18	2.1e-05	0.0034	19.3	3.9	1	23	119	141	119	141	0.98
5	18	7.8e-05	0.012	17.6	0.6	1	23	156	178	156	178	0.98
6	18	3.8e-05	0.006	18.6	2.6	1	23	193	215	193	215	0.98
7	18	3.1e-07	4.9e-05	25.1	1.5	1	23	230	252	230	252	0.99
8	18	0.00014	0.022	16.8	2.8	1	23	258	280	258	280	0.98
9	18	9.7e-06	0.0015	20.4	2.1	1	23	286	308	286	308	0.99
10	18	0.031	5	9.4	1.8	1	23	315	337	315	337	0.98
11	18	5.3e-07	8.3e-05	24.4	2.3	1	23	343	365	343	365	0.99
12	18	0.036	5.7	9.2	1.8	1	23	372	394	372	394	0.98
13	18	2.1e-06	0.00034	22.5	1.5	1	23	400	422	400	422	0.99
14	18	0.00041	0.064	15.3	0.7	1	23	429	451	429	451	0.99
15	18	2.4e-06	0.00037	22.4	1.9	1	23	457	479	457	479	0.98
16	18	0.0017	0.27	13.3	0.3	1	20	485	504	485	507	0.93
17	18	3.2e-05	0.0051	18.8	1.3	2	23	514	535	513	535	0.96
18	18	3.1e-06	0.00048	22.0	1.4	1	23	541	564	541	564	0.97

Sequence Information

Coding Sequence: ATGGGAGTAGACATAAGTTCAATACAAGCGAAGTTGGAGATGTCCAATGGAGGCCAAGTACCAAGAAACAAACCACAAGCTTGTAAGgTGTGTGGTAAAGTTTTATCATCGGCATCATCATATTATGTGCACATGAAGTTACACTCTGGAAATAAACCTTTTCAATGCACgGTCTGCGATGCGGCATTTTGTCGCAAGCCGTATCTCGAAGTGCACATGCGAACGCACACAGGCGAAAGACCCTTCCAATGTGATCTCTGTCTTAAACGATTCACACAGAAGTCCAGCCTGAACACGCACAAACGCGTCCACACCGATGAGCACATGCGCGCGTTGTTGGTGAAGGAGCGGCCCCACCAGTGCGATCTCTGTCAGATGCGCTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATACACACGGAGGAACACAAACGCGCGCTGCTGGCTAAGGATCGTCCCTACCAGTGCGGCATCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATTCATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATCCGCTTCACTCAGAAGTCCAGCCTGGGCCGTCACGGAAAGATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGCGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGGCGAGCGGCCCTATCAGTGCGACGCCTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTGAATATACATAAACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGAtacacacgcgcacgcacactgGCGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAATCCAGTCTCAACATTCACAAGCGAACGCACTCAGTGCAGGGCCGCCCGTTCCAGTGCCTCCAGTGCCCAGCCGCTTTCACCTGTAAGCAGTACCTCGAGATACACAACCGCACTCATACCGGCGAGCGTCCTTATCAGTGCGACGTATGCCTCAAGAGATTCGCACAAAAATCTACactaaatatacacaaacgaACGCACACAGTGCAAGGGCGGCCGTATCAATGCATGGAGTGTCCGGCCGCGTTCACTTGCAAGCCGTACCTGGAGATTCACATGCGCACGCACACCGGCGAGCGCCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACTCAGAAATCAACGCTCAATATTCACAAGCGAATACACACCGgtgaacgtccatACGCATGTGATATTTGTCAAAAAAGATTTGCTGTAAAAAGTTACGTCACGGCTCATagGTGGTCACACGTGGCCGACAAGCCGTTGAACTGCGAGCGGTGCTCGATGACTTTCACGTCCAAGTCGCAGTTCGCACTGCACATCCGCACCCACTCCGCCGCCTCCTGCTATGAGTGCAGCGTCTGCGGGCGGACCTTCGTGCGCGACAGTTATCTCATAcgACATCATAACCGTGTACATCGCGAGAACCACAGCAACATGTCGGCCAACAGTATCGGCACGATGACCGCCACCAACACGAACAACTCCAACAGCAATTTCGATTCTCCCGGTGTTTGTGACTTAAGttTTGTGCCGATGGTTAATCGCTACATGACTTCTCAGGGCACGCAAGTGTCTATGCAGGATACAAGCAAAATGTCCTCCATGTCTCCCCAGTCCATCGCTTCCatttCATCACCCCCACCCCCTCACACGCCTACACCGCAGCCGATGTCCGGTCAGATGCGTCTCACGGACTGA
Protein Sequence: MGVDISSIQAKLEMSNGGQVPRNKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALLVKERPHQCDLCQMRFTQSSSLNRHKKIHTEEHKRALLAKDRPYQCGICFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFIRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHSAASCYECSVCGRTFVRDSYLIRHHNRVHRENHSNMSANSIGTMTATNTNNSNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSSMSPQSIASISSPPPPHTPTPQPMSGQMRLTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00010401;
90% Identity: iTF_01076785;
80% Identity: -