Acin043907.1
Basic Information
- Insect
- Athripsodes cinereus
- Gene Symbol
- -
- Assembly
- GCA_947579605.1
- Location
- OX388314.1:20309572-20311497[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-07 7.3e-05 23.8 0.0 1 42 17 59 17 60 0.92
Sequence Information
- Coding Sequence
- ATGCCTAGGAAGTATGTGAGAAAAGGAAATTCTGGCAGAGGGGAATGGTCAGAAGACAACTTAAGATGTGCGGTAGAACTAGTGACCTCGGGAAAAATTTCGAAACGAGAGGCCGAACGTCTATACAAAGTCCCAGCTAGAACCATTTCAAGGCGAATATTGTCAGGAAAAATCACGAAACCTTGTCTTGGACCACAAGCATCTCTTGGTGTGGAAAATGAAAGACGACTTGCACAATACATTAAACGACTTGGTGCTGCTGGATTTGCACCAAATAGAGAAACAGTTCGATCACTGGCCTATGATTTTGCAGAAAATCTGGGAATATCACATCGGTTTTCGAAGGAAAACAAAAAAGCTGGCTATCATTGGTTGACTTCGTTTTTGGAACGTAATAAAGATATTTCCATCAGGCAAGCTGAGGGACTTTCTGTGGCGAGGGCACAGGGAATGAACAGAAAGGAGGTAGAAGTTTTTTTTAATATTTTGGAGAAACAAATGATTGAAAATAACTTGGTTGATAAAGGAGAAAATATATTTAATATGGATGAAACTGGAATCCAGCTAATAAATAAACCTGGCCGCGTACTGGCTGCAAAAGGATCCAAGGACGTCCATGTCCTAACACCAAAAGAAAAAGGCGAGACAGTTTCCCTGATTGCCTGCTGTAATGCTGCAGGATACTTCTTACCACCTGTTGTAATAATGAAAGGGGTCAACAGGAAATCTGAATTTTCTGATGGACTTCCACCTGGATCAGAGGTGTATATGAACAAAAAATCTGCCTACATAACCACAGAACTTTTTATAAAGTGGTTTAAGGAACATTTCTTGCCTCGTAAAGCACCAACTGGAAAATCTATATTAATTCTAGACGGGCACTCCTCACATTCAAATTCTATAGAACTCCTAGACCTTGCTCGTGATAATGCTGTTATCATTATATGCTTACCAAGTCATACAACTCAGGCCCTACAACCATTAGATAGAAGTTTTTTTAGAAATAAGTCCAGAACATTAACTAGATATCAAGTTGGTGATCTGATAGGTCGAGCATGGGGAAAGGCTGCCACAAACGGTAATGCTTTGTCTGGTTTTACAGCCTGTGGAATTTATCCGCTAAACCCCAATGCCATTCCTGATCATTTTTTTACAATATCGGAAAATACAGATATTGAGCCAATAGCATCAACACCGTCCACTCAATTAATAGCACCAGCACCGTCCACTCAGTCAACACCAACACAATCAGAGCCATTGTTATCTGACTTGCCTACAACTTCTGCAACATCCCAAAAAGAAACACCCACCAAAGTTCTGGAAGCAATAAGTCCAATACCAAAACTACCAATTTCAAAAGTCAAAAGAAAACAGGTGGCCAAAGTGCAAACCTCGGACGAAAACATTGCGTTCAAGAAAACCAATAAGCCCGAATTAATTAAGTCATCCAAAACAAAAAAGGCAGAAAAAAATAAAAAGAAACCCACTTCTTCCGGGCCAATTGCCGATGAATGCAACCGTTGCTCGGAGTGTTGGGAAAACTATTTTCTAACAACAAATAAGTGTGATTGGATCCAATGCCAAGAGTGTCACAAATGGCTACATGAAAGCTGCACGGTGTACACCACTACGAGTATGTGTAATGAGTGTGGTCGCGAAAAAATTAGAATAAGGAATACAAATATTGCTAAATAA
- Protein Sequence
- MPRKYVRKGNSGRGEWSEDNLRCAVELVTSGKISKREAERLYKVPARTISRRILSGKITKPCLGPQASLGVENERRLAQYIKRLGAAGFAPNRETVRSLAYDFAENLGISHRFSKENKKAGYHWLTSFLERNKDISIRQAEGLSVARAQGMNRKEVEVFFNILEKQMIENNLVDKGENIFNMDETGIQLINKPGRVLAAKGSKDVHVLTPKEKGETVSLIACCNAAGYFLPPVVIMKGVNRKSEFSDGLPPGSEVYMNKKSAYITTELFIKWFKEHFLPRKAPTGKSILILDGHSSHSNSIELLDLARDNAVIIICLPSHTTQALQPLDRSFFRNKSRTLTRYQVGDLIGRAWGKAATNGNALSGFTACGIYPLNPNAIPDHFFTISENTDIEPIASTPSTQLIAPAPSTQSTPTQSEPLLSDLPTTSATSQKETPTKVLEAISPIPKLPISKVKRKQVAKVQTSDENIAFKKTNKPELIKSSKTKKAEKNKKKPTSSGPIADECNRCSECWENYFLTTNKCDWIQCQECHKWLHESCTVYTTTSMCNECGREKIRIRNTNIAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01024865;
- 90% Identity
- iTF_01024865; iTF_01024849; iTF_01024851; iTF_01024852; iTF_01024853; iTF_00179254; iTF_01024854; iTF_01024855; iTF_00179256; iTF_01024856; iTF_01024857; iTF_01024858; iTF_01024859; iTF_01024860; iTF_01024861; iTF_01024862; iTF_01024863; iTF_01024864; iTF_01024850;
- 80% Identity
- -