Aibi015597.1
Basic Information
- Insect
- Atherix ibis
- Gene Symbol
- -
- Assembly
- GCA_958298945.2
- Location
- OY282607.1:82182589-82186003[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00021 0.99 10.2 1.2 27 48 247 268 244 279 0.92 2 6 0.17 7.9e+02 0.9 0.0 24 43 300 319 295 323 0.76 3 6 1.5 6.8e+03 -2.1 0.0 22 46 367 391 364 397 0.74 4 6 0.00012 0.57 11.0 0.1 21 45 394 418 388 427 0.86 5 6 0.91 4.3e+03 -1.4 0.0 24 48 425 449 423 453 0.79 6 6 0.0016 7.5 7.4 0.0 21 43 450 472 444 476 0.92
Sequence Information
- Coding Sequence
- ATGACTTCGAGTATTTGTCGTGGTTGCGGTTTGTTGACGACAGCAgcaataATTGAAAAATGCGATGGACTACCAGAACTTTTATGCACAAAATGTATCGAGCAATTGCAATTATCATACAAATTCAAGCTACGGTGCATAATATTGGATGGTCATTTCCGACAAACGAAACAAGATTCGGAAACCGACTATGATGCCATTTCTTCACCAGATTTTAATGATTACAAAAGCGATGATAACCTCATAAGTGTTGATGCTaatgaaaaagataattttattattaccgaTGAAGTTCAACATATAAAAGGTGAATACGAATATATTGATAATAATGCAtattcaattaaagaaaaagaatatgaaaaattcattgaaattgatgaaaatgaaaTTCACTTGGacgaaattgatgaaaatgaaaTTCACCTGGacgaaattgatgaaaatgaaaTATATCTAGACGAAATTCAGGAAGACAAAAACTACACATTTATTGACTTATTACagGTTAATGATACAGTTACGAATGACccggaaaatttagaaaaagatagtcccattgcaaatttaaaatgtgAGAGATGTGATACGGAATTTGAAAACAAAGAGGAATTAAATAAACATACAGAGCAGGCTGGCAGTCATCGCTTCCATTGTCAGAAATGTAACAGATGGTTTTCGAGAAAAAATCACTTCAATATTCATATGGAAACACATGGGCACAtcgaatattttaattgttcatTATGTTCAAGCAAATATAAGCATAGAAGGAATTTGAGACGTCATATAGAAGACAATCATAAGAATGAACTTCCCTTTGTATGCAAAGTTTGTGGGGAGCGTTTTAGTTCTGACGAAGAATTCTCAAATCATAAAACTTGgcatattgagaaaaaatattcttgtgaTATATGTGGTAAAaaaGTAACTACCAGTCGTCATTTAGAATTGCATCAAAAATCACATGTACCTAGGATAATTAAACGTCGAAAGTATGTTTACAAAGACAATAAAAGGAGTTATTTATGTGCACAATGTGGTAAAATATCGACAAGACTTTCTACACATTTTAAGCATTTACAAACTCATACGGACGAAAAACCGCTCGAGTGTTCTTTCTGccaaaaaagatttaaattccACAATACTTTAAATAGTCATATTAGAATACATACTGGTGAAAAGCCATTCAAGTGTGATATATGTTCAATGTCTTTTAGGCAATCGCAACAATTGAAAAgccataaatttattcattctgGAATAAAGCctcataaatgtaaattttgtgAGAGAGCATTTATACAGAAGGGCAATTTAGTAGCTCACGAGCGACTGCATACAGGAGAAAAGCCTTACAAATGTAAAATATGTGGTAATGCATTCCATAATTCGAAAGGCCTTAAACGTCATAAGCACGATGATTTAAATGAAAGccaagaataa
- Protein Sequence
- MTSSICRGCGLLTTAAIIEKCDGLPELLCTKCIEQLQLSYKFKLRCIILDGHFRQTKQDSETDYDAISSPDFNDYKSDDNLISVDANEKDNFIITDEVQHIKGEYEYIDNNAYSIKEKEYEKFIEIDENEIHLDEIDENEIHLDEIDENEIYLDEIQEDKNYTFIDLLQVNDTVTNDPENLEKDSPIANLKCERCDTEFENKEELNKHTEQAGSHRFHCQKCNRWFSRKNHFNIHMETHGHIEYFNCSLCSSKYKHRRNLRRHIEDNHKNELPFVCKVCGERFSSDEEFSNHKTWHIEKKYSCDICGKKVTTSRHLELHQKSHVPRIIKRRKYVYKDNKRSYLCAQCGKISTRLSTHFKHLQTHTDEKPLECSFCQKRFKFHNTLNSHIRIHTGEKPFKCDICSMSFRQSQQLKSHKFIHSGIKPHKCKFCERAFIQKGNLVAHERLHTGEKPYKCKICGNAFHNSKGLKRHKHDDLNESQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00176617;
- 90% Identity
- iTF_00176617;
- 80% Identity
- iTF_00176617;