Aibi021631.1
Basic Information
- Insect
- Atherix ibis
- Gene Symbol
- Hr39
- Assembly
- GCA_958298945.2
- Location
- OY282609.1:30610814-30616172[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.85 5.9e+03 -3.1 2.7 59 131 83 164 45 218 0.46 2 4 4 2.8e+04 -5.7 7.1 52 149 267 364 242 396 0.47 3 4 6e-11 4.2e-07 30.4 0.0 1 127 462 574 462 593 0.78 4 4 4.2e-78 3e-74 251.5 0.5 164 408 542 800 535 800 0.90
Sequence Information
- Coding Sequence
- atgACTGATACTGGTGGAGCAACGTGCACGAGCACACCGGAGCTTGGTAGCGGTCTTCCGATAGTAGGAGTGGCTCTGGCAGCGACAAACCTCAATTCGAATTCAACGACAACGTCGATAAACCGTTGCAATAATGTGTCTGTGACAAGTATTAAATGTGAGGTGGATGGTGATGCACCATCGACGCCATCGTCGACGATGTCGTCCTTATCGTTGACGAACATATTGGCGACAACGGCGTCTGTGACGTCGACAACTCCAGGTAATGTTCACGTGTCAACAACAAGTGGAACGACATCAGAGAACGGTGTGcctaatagtaataatagtagtaatagTAGTAGTTTCTTTAATGGAGCGACGGGAATTCGAATTTCCGTTCCAAAAGTAGAAGATTCCGACGAATCGGAATCGGAATTGTCGACAATCGAAAACTCAAAAGTGAATATGCGATCGAACGTAGTCAGTAAGAATGGACCAAGGCCGATGTCGTGGGAAGGTGAACTGTCGGAAACGGAGGATCTGATGGACACAGAAAACTCAATAAGCAATGATAAGCAGTGCGAAGACTCTCAAATGTCCACAAAGGATGATTCGACTATGATCAGTATAGTCAAGCCAGAATATGATCATTGCGGTCCAGAATCTGGGCCGAATGCATTTTCGTCCGGACTTAAAAAGTTTCAGAACGATATTGCGgtcaatttaaaatatgagCCGGGTCTGTCGGACGTGACGGCCAGTGCTCTGAACTCGCCGCTTCTGGCACGCTCTAAAACAAGTCTACTTCCCGCCAATCCGAGTCCAGATTCCGCTATCCATTCCGTATACACACACAGCTCCCCAAGTCAGTCGCCGCTTACATCACGCCACGCGCCATACACGCCCTCGCTAAGTCGAAACAATAGCGACGCATCGCACAGTAGCTGTTATTCATATAGTTCTGAATTTAGTCCAACACATTCGCCTATTCAGGGCCGGCACAATGTCTACGGTAACTTTAATAGTTCTTTGCATCATCATTCCTCAATGCTCTACCGGCCGATGCTGGACGGCGCTGACGCCCAACCTCATCAGTCGCATAGTCCGAATCCACGTCGTTCTGAAGATGTCCTGCCCGAGAATGATGCGATTCCTGCAGCGGGAATTTCACGACAGCAACTAATCAACAGTCCTTGCCCCATTTGCGGTGACAAAATATCCGGCTTCCATTACGGCATATTCTCCTGTGAATCATGCAAGGGATTCTTCAAACGTACCgtccaaaaccgaaaaaactaCGTCTGCGTAAGAGGTGGACCGTGTCCAGTGACGATTTCGACGCGAAAAAAATGTCCTGCTTGCCGATTCGAGAAATGCCTACAAAAAGGCATGAAATTGGAGGCCATTCGTGAGGACCGCACTCGTGGTGGCCGTTCCACATATCAATGCTCATACACTTTGCCCAATTCAATGCTGACACCGCTCGTTAGTCCCGATGTCACGTCGTGTCCACCGTCATCCACACATCGAAATACTATTAACGGTTTCGTGTTAAAGTCTGAACAGCCCGATATTAGTAACGGCAATAGCAATAGTAGTTTAGGTGGGGGAGGAGGAGGCGGCAGTGGAATTAATAGTAGTCATCATAGTAATAATATACCACCGCTTTTACAGgaAATTATGGACGTTGAGCATTTATGGCAATACAACGAATCGGAGCTGGTACGTCTTCATCAAACGCCAACATTATCGAACGTTGATACAAGTCGTTTACAGTCAAATCCTTTCTTAGCCAGCGCAGGTTTATCACCATCGAACGGTGATAGTTCCATACCTGATCTGATAGCAAATTTGTGCAATGTTGCCGATCATCGATTGTACAAAATAGTTAAATGGTGCAAGAGTTTGCCGCTCTTCAAACATATTTCGATTGACGatcaaatttgtttgttaattaacTCTTGGTGTGAATTGTTATTGTTTTCGTGCTGTTTTCGATCCATACAAACGCCAGGAGAGATAAAAATCTCACTAGGGAAATCTATAACGCTTGCTCAAGCCAAATCCAATGGTCTGCAGgcaTGCATTGAACGAATGCTTAACCTAACAGATCATCTGAGAAGATTGCGTGTCGATCGATACGAATACGTTGCCATGAAAGTAATTGTTTTGCTACAATCCGATACATCGGAGTTGCAAGAACCTGTAAAAGTGCGTGAAAGTCAAGAGAAGGCATTACAAGCATTGCAAGCGTACACATTAGCCCATTATCCAGATTCACCAGCTAAATTTGGTGAATTACTATTGCGAATTCCCGAATTACAAAGAACATGTCAGCTTGGTAAAGAAATGCTTACAATAAAACCAAAGGACGGTGaagatttcaatttattaatggaATTATTACGTGGAGAACATTGA
- Protein Sequence
- MTDTGGATCTSTPELGSGLPIVGVALAATNLNSNSTTTSINRCNNVSVTSIKCEVDGDAPSTPSSTMSSLSLTNILATTASVTSTTPGNVHVSTTSGTTSENGVPNSNNSSNSSSFFNGATGIRISVPKVEDSDESESELSTIENSKVNMRSNVVSKNGPRPMSWEGELSETEDLMDTENSISNDKQCEDSQMSTKDDSTMISIVKPEYDHCGPESGPNAFSSGLKKFQNDIAVNLKYEPGLSDVTASALNSPLLARSKTSLLPANPSPDSAIHSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIQGRHNVYGNFNSSLHHHSSMLYRPMLDGADAQPHQSHSPNPRRSEDVLPENDAIPAAGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGPCPVTISTRKKCPACRFEKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPNSMLTPLVSPDVTSCPPSSTHRNTINGFVLKSEQPDISNGNSNSSLGGGGGGGSGINSSHHSNNIPPLLQEIMDVEHLWQYNESELVRLHQTPTLSNVDTSRLQSNPFLASAGLSPSNGDSSIPDLIANLCNVADHRLYKIVKWCKSLPLFKHISIDDQICLLINSWCELLLFSCCFRSIQTPGEIKISLGKSITLAQAKSNGLQACIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTSELQEPVKVRESQEKALQALQAYTLAHYPDSPAKFGELLLRIPELQRTCQLGKEMLTIKPKDGEDFNLLMELLRGEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00176486;
- 90% Identity
- iTF_00176486;
- 80% Identity
- iTF_00176486;