Aibi006653.1
Basic Information
- Insect
- Atherix ibis
- Gene Symbol
- Mbd3
- Assembly
- GCA_958298945.2
- Location
- OY282605.1:141171472-141173248[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-23 1.8e-19 69.7 0.0 1 74 5 73 5 76 0.92 2 2 0.00057 3.2 8.0 0.0 28 74 118 172 102 175 0.86
Sequence Information
- Coding Sequence
- ATGAATATAACTATTGAAAGAAAGAAAAGTGAGTGCAGTGCATTACCGAAAGGTTGGCAAAGGGAGGAAGTGCTTCGAAAAACGGGACTATCAGCAGGAAAGGTTGATGTTTACTATTATAGTCCGGctggaaaaaaaatcgatagtAAACCCCAACTAGCCCGGCAATTGGGCGATTCTCTTGATGTCTCATCGTTTGACTTTCAGACTGGTAAATTGATCCCAAATGCCCAAGCATTAACATTACAACGTGctgcaaatgctttaaaacgtAAATTACCAGCTGGTACCACATCGGTTTGTAGTCCTGGAACTAATGTATCACCGGCGGCACACTTCGAGTTCAGtcGTAACATGCGTACAGATGCTTCCCTAGTACCACCAATAAGACAAACAGCGTCAATTTTTAAGCAACCAGTGACTGTATATAAGACACAGGAAGGCAAGGTTAAGAACGATTTAAGGCATGGATCACAAGAGAAACCGAAACAGTTATTTTGGGAGAAGCGATTAGAAGGTTTACGCTCATGTGACACTGGCGGAAACGAATTCGGACCAATCGAATTGCCTAGAGGGATCAAACCTGTTGGTCCAATGGTTACAGAACAAACTCTTTTACAGTCTGTGGCGACAGCGTTACATGTATCAAATCAGGCAGTAACAGGCCAAACAGCGTCTAAAGCCGCATTGAATGCTAATTCGGGCGTTTATTTAAATCCAGATCAGCCACTTATGCATTCAATTAGTATAACCGAAGATGATATTAGAAGGCAAGAAGATCGTGTATCGTATGCTCGTCGAAGACTTCAAGAtgcattgaaaatttaa
- Protein Sequence
- MNITIERKKSECSALPKGWQREEVLRKTGLSAGKVDVYYYSPAGKKIDSKPQLARQLGDSLDVSSFDFQTGKLIPNAQALTLQRAANALKRKLPAGTTSVCSPGTNVSPAAHFEFSRNMRTDASLVPPIRQTASIFKQPVTVYKTQEGKVKNDLRHGSQEKPKQLFWEKRLEGLRSCDTGGNEFGPIELPRGIKPVGPMVTEQTLLQSVATALHVSNQAVTGQTASKAALNANSGVYLNPDQPLMHSISITEDDIRRQEDRVSYARRRLQDALKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -