Aibi007859.1
Basic Information
- Insect
- Atherix ibis
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_958298945.2
- Location
- OY282606.1:24520557-24525041[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.7e-71 1.9e-66 225.1 15.9 103 299 1 185 1 186 0.94 2 2 0.017 4.6e+02 0.5 3.4 215 246 210 240 189 260 0.53
Sequence Information
- Coding Sequence
- ATGATAGCAAATGCACAATTAGATAATGAAAGAGCTTCGCAATCTTATCAAATACAATTACTTAAAGACAAACTGGAAGAAATGGAAGAATCGTATGCCCAGCTTCAGAGGGAGTTTAAGGAGAAATGCCGTGATTATAATGCTCTGAAACGAAATTTGGATAAATTAGATGAAGAATTGAAATTAGTTCGGGGGCAATTAAATGAACGAGATACTCTTATAGCTGAACAGGGTTTAGTTATAGTTATGATAGAAAATGATGATGGCTCAGATGCCAGACGTGCTCTAGTCACTATGGAGAATGCACAATTGTTAGGTTCCGTACAAGGTTCTTTAGATGTTAGACTTAAAAGGTTTACGGAGGAAAAACATCAACTCCACAAAGAAGTTCAAACTCTGCAACAACAATTATCCGACCTCAAATCGCAAGGACGAAGAGGGAGCACAATGAACGGTCCTCTTGGTGGTGATGATGATTACGATGCGCAGAgagaagcaaataaattaatttccgaaTATAAATTCAAACTTCAAAAAGCCGAACAAGAAATAGCTAGTCTTCAAGCCAGTCTCGCGCGATCCGAAACTCAAGTTATCCGATATAAAAGCACAGCAGAGGCGGCAGAAAAGGCTGAATCCGATCTGAAAATAGAACGAAGAAAATTGCAACGTGAGAATCGAGAAGCAATGGAACGTATGGAAGAATTGGAAACAACaaataatcatttattaaaacGCTTAGATAAACTTAAAAATGCTAAAAGTGCACTACTTAAGGACCTCTGA
- Protein Sequence
- MIANAQLDNERASQSYQIQLLKDKLEEMEESYAQLQREFKEKCRDYNALKRNLDKLDEELKLVRGQLNERDTLIAEQGLVIVMIENDDGSDARRALVTMENAQLLGSVQGSLDVRLKRFTEEKHQLHKEVQTLQQQLSDLKSQGRRGSTMNGPLGGDDDYDAQREANKLISEYKFKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAESDLKIERRKLQRENREAMERMEELETTNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -