Aibi006237.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Atherix ibis
Gene Symbol
PAXBP1
Assembly
GCA_958298945.2
Location
OY282605.1:131674583-131681140[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.7e-31 1.6e-27 97.5 0.2 2 272 573 783 572 785 0.94

Sequence Information

Coding Sequence
ATGTCTTTATTTCGGAAACCTAAAAAACCGATACAGCGTCGTGTTTTCAGTACTTACGACGATGACTCTGAAAACAGCTTCAACAAGGATGAAAAAATGGAAGTTGATAATGAGGCGCCTTGCTTGTTATCgaagaaagaaaaggaaaaagataagaaaaaggataaaaaggATCACAAAAAAAGTGATAACATCCAATCAAAGAAATCTTTATTAAGTTTTGATGATGACGAAGAAGAAGGTGAAGTGTTCCAAGTTAAAAAATCATCGCATAGCAAAAAAGTTATGAGAATGTTGGACAAAgagagaagaaagaaaaaatcaaaggaTTGGAAACCAGAGAACGATGACGCTGCCAATGGTAGTGAATTGTCTCTACAATctcaaaataacaataatactgATAATATTCAAACCGAAATACGCACAGACGACTTTGTGttGGTTGTTAAAAAGTCGGAACCggataatcaaatattaaatggGCGGGCAGCATTGTGTGCTGGTCGCGATGACATGTCATCCGAAGATGAAAAGGAAGATAATTCCTCTAAACAAAAGCATAAATTCGCAAAAccagataattttaaaatggtaTTAGAAAGTGGTTGTATCCCAGATGCGGCAATGATCCATGCAGCAAGAAAAAGTCGACAAAAGGCTAGAGAATTAgGAGATTTTGTTCCATTGGAAGATACAACTAAAGAGACaacaaaaataggaaaaagaCTCGTGCGCGATGATGGAGATGATGACAATTCAGAGGAGGAAGATCGTGTAGATATGAATGCTATAACGGGCATGAAAGAACGCGAAGAAAggcgaaaaaaattctattcggtTCAAAATGAATATTCAGGTGATGAATCTGAGCAAGAAATGCACGAATGGGAAAACCAGCAAATACGCAAAGGAGTAACTGGAGCGCAGCTTGTAACGGCGCAACAAGAATCCGTTCTGTCTCAATTCATAATACGGCCTCCAAATTCTATGGAAGAACCGGAGCCTGTATCAACGGCATCTTTACTCGAACAAGCATATGCACGGAGTTATTTAGAAAAACCACGTCAGTTGTTAGTTAGTACGAAAAAATCTGATGCTAAACCAACAGGACcgaaaaatccacaagaaatcACTGATATGCTTAATCAACAGTTATATAAGATTCAAGAGTTGCATGAACAACACTGCAATGAAATTGAACGAATTGTGAAAGACCTAAGAGTTATTAAACTTGAGAGTTTGGACTCAGAGCAAAAGGCTCCAATAGCGGCTGCTAAATATCGGTTTTATCAAGAAATACGTGGGTATGTTACAGACTTGGTTGATTGTCTTGATGAAAAGGTCCCATTAATAAATGACATGGAAAAACGTATTATGAATGTTTGGTCAAAATACGCCAATAATCTAATAGAAAGACGACGTCAAGATGTGCGAGATCAAGCAAAAGAATCAGCTGAACAGTCAAgaggAATGTATAGAAAAGGTGCAGAAGATGAGGAACATATAAGACGTGCCGCAGAGCGTGAAGGTCGACGAACGCGAAGACGTTGTGAACGTgagaaaaacaattataataattctcATCTTGATGGAATGTCTAGTGATGACGAAATTGCTGATCATGAATTGGCACAGTACAGAAATAGTTTAGatcAAATAGAGGTAGAAGCTGATGATCTTTTCGAGGATACATATGAAGATTttagtaaaatagaaaatattttaacaaaatttgaagCATGGCGTAAAACCGACGCAGAATCTTACAAAGAAGCTTTTGTTAGTTTATGCCTGCCAAAAATCGTTGGACCATTATTTCGAGTAAAAATGATGATTTGGAATCCTTTAGAAGCAAATTAtcaagattttgaaaaaatggaCTGGTATTCAACGTGCATGCGATATGGTTGGAATCAAGACGAAACAGAAGAAAGTCTACTTAAAGATACGGACTTGAAATTCGTTCCAACTATAGTGGAGAAAattatttgtccaaaaattacCGATTTAATAGATAATTGCTGGGATCCACTCTCAACTTCACAAACTTTGCGGCTAGTTGGTTTAGTAGGACGTTTAGGACGGGAATATCCAATTATAACAGAAACATCTAAATGCTCTTTAGCATTGTTTAATTCTATTCTAGATAAAATGAAATCATCAGTAGAAAACGATGTTTTTATGCCAATATTTCCAAAACAaATTCAAGAAGCGAAAACATCATTTTTTCAAAGACAATTTTGTAGCGGACTAAAACTATTTAGGAATTTGTTGAGTTGGCAAGGAATTATTGCGGACAGACCACTCAAGGAGTTAGCAATTTCATCATTATTAAATCGCTATTTATTATCAGCAATGAGAgtATGCACTCCCAATGATGCTATTTCAAAAGCATATATAATTGTAAATACGCTACCAATAGCTTGGCTACAGCCAGAATCTGAAATTTTAGAAAGCttacaactttttataacatttataagaCACCTACTTAatcaaatagataaaaaaagtacatttcATGTAGATTGTTATGACAAGGGAAAGCAAATACTTCAACGTCTGCatagttatttataa
Protein Sequence
MSLFRKPKKPIQRRVFSTYDDDSENSFNKDEKMEVDNEAPCLLSKKEKEKDKKKDKKDHKKSDNIQSKKSLLSFDDDEEEGEVFQVKKSSHSKKVMRMLDKERRKKKSKDWKPENDDAANGSELSLQSQNNNNTDNIQTEIRTDDFVLVVKKSEPDNQILNGRAALCAGRDDMSSEDEKEDNSSKQKHKFAKPDNFKMVLESGCIPDAAMIHAARKSRQKARELGDFVPLEDTTKETTKIGKRLVRDDGDDDNSEEEDRVDMNAITGMKEREERRKKFYSVQNEYSGDESEQEMHEWENQQIRKGVTGAQLVTAQQESVLSQFIIRPPNSMEEPEPVSTASLLEQAYARSYLEKPRQLLVSTKKSDAKPTGPKNPQEITDMLNQQLYKIQELHEQHCNEIERIVKDLRVIKLESLDSEQKAPIAAAKYRFYQEIRGYVTDLVDCLDEKVPLINDMEKRIMNVWSKYANNLIERRRQDVRDQAKESAEQSRGMYRKGAEDEEHIRRAAEREGRRTRRRCEREKNNYNNSHLDGMSSDDEIADHELAQYRNSLDQIEVEADDLFEDTYEDFSKIENILTKFEAWRKTDAESYKEAFVSLCLPKIVGPLFRVKMMIWNPLEANYQDFEKMDWYSTCMRYGWNQDETEESLLKDTDLKFVPTIVEKIICPKITDLIDNCWDPLSTSQTLRLVGLVGRLGREYPIITETSKCSLALFNSILDKMKSSVENDVFMPIFPKQIQEAKTSFFQRQFCSGLKLFRNLLSWQGIIADRPLKELAISSLLNRYLLSAMRVCTPNDAISKAYIIVNTLPIAWLQPESEILESLQLFITFIRHLLNQIDKKSTFHVDCYDKGKQILQRLHSYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-