Aros007742.1
Basic Information
- Insect
- Athalia rosae
- Gene Symbol
- -
- Assembly
- GCA_000344095.2
- Location
- NW:53195-58141[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00039 0.025 14.3 3.1 2 23 369 390 368 390 0.96 2 15 0.0014 0.089 12.6 1.9 1 23 396 419 396 419 0.97 3 15 6.5e-05 0.0042 16.7 0.8 2 23 500 521 499 521 0.97 4 15 4.2e-06 0.00028 20.5 2.3 1 23 527 549 527 549 0.98 5 15 7.5e-05 0.0049 16.5 0.4 1 23 555 577 555 577 0.98 6 15 7.2e-07 4.7e-05 22.9 1.4 1 23 593 615 593 615 0.98 7 15 4.7e-06 0.00031 20.3 1.2 3 23 623 643 621 643 0.98 8 15 8.2e-06 0.00054 19.5 2.2 1 23 649 671 649 671 0.98 9 15 0.00058 0.038 13.7 0.2 1 23 677 699 677 699 0.99 10 15 1.3e-05 0.00087 18.9 0.2 1 23 705 728 705 728 0.92 11 15 2.1e-05 0.0014 18.2 1.5 1 23 734 756 734 756 0.98 12 15 5.6e-05 0.0037 16.9 4.6 1 23 762 784 762 784 0.98 13 15 4.3e-06 0.00028 20.4 0.2 1 23 790 813 790 813 0.96 14 15 9.7e-06 0.00063 19.3 0.9 1 23 819 841 819 841 0.96 15 15 2.5e-06 0.00017 21.1 4.5 1 23 847 869 847 869 0.99
Sequence Information
- Coding Sequence
- ATGAAACAAGAGATGGACTTCCTCGATGTAAACATGTGTTCTGAGCCAACCATTATGCAAATTAATTCAAACAAACCTTTAATGGAACAAAGAACTAATGAAAACGGCCGATCGGTGCTATCCAGAGGGGTACAAAATGCTCTCACCAATTTAGATTGTGACACCACAAGACAAAGTCTTGAGTCTAATCTTTACCAAAAGccggaaaaagaaagaccGACAACTGAACATATGAATTCTCGATGTCAAGTTGATATCATTGATATGAGAAGTGATCAACACGCAGATTATAGATTTATTTTAGCTTTTGAAGATCAAGAATCTAAGTTTGTTATTCTTCGACCATTGAAAAGCAATGATGCAAAAGATGTGGCGGTAGAGTTGTTTGATATCTTGGCAATTATTGGAGCCCCCAGAGTTTTACAAAGTGGTAATGGCAGACAATTTGCCAGCAAAATAGTTTATGCATTAAGATCCTTATGGACAGATCTTCCAATGGTACACGGAGATCTAGTGTTACCTTCAACCAGTGTCAAACGAGACTTCACAACTTTGTTGAAAAACTGGCTTCATGATAACCCTGCAAAAACATGGTGTGAAGGATTGCGGTTTGTTCAAATCATTGAGAATACTACATTTAAGCAAGAATCTGGTAGAACAGCTCACGAGTTGCTGTTTGTAAACAATGTTCTTGATGACTCTAAAACTGCTATTACAAAAGAAGATATGAAGATGATATGGAGCGAAGAAGATTTGCAAGAAGCATTGAACCATCAACAAGAAAGCATTCAATCAACCAATCACACATCCAGCTCAAAACTGATAGTCAATAATTACGGAGAACAAATATTGCCTAATAATCCAGTCAGCTACACGGAAGAGAATctcccTATGAAAGAAGATACCACAGATCCGGATAGTACCGAATTTGAAAGGCAAACTAGACAATTGACTGCACATTGTAATAATTCTAGTGGATTCAAATTcgtgaatgtgaaaaatgaaagtccATTAAATGTTTCACTAGCAGATGATTCTCAATCAGATGACGAAGTAACTGTGACGTCTCAGGGTAAAACAAGATCAAGAAATAAGTACCAATTGAAGtgtaaaatttgtcaaaaaagaTACATGAAGTTGGGTCATTTGAAGAATCACCTCAAGGCACATACAAAGGCGAATAAATTCGAGTGTACGATATGCTCTAAGAAGTTCCGGCTTGTTACTGTCTACGAAAAACATATGCGTCAATTTCACAGCTCTGAAAAAACTTCGTTTGATGCCAGATATGCTAGAATTGGAGAAGGCCTAGAAAGTGATACAGAGGAAACTTTGAAATCTAAAAGACTTAAAAAAGTTGAGCCCGAAAACGATGAGTCCAGCCAAATTCATTGCAAGAAAGTTACGAAAAAAGTTGGGAGACAGTCAAGTCAGCTAGGTGGTAAAAAACTATCCAGAGAAAATCGAGCCACTAGAGTAAATGGTTCACCTCCGTTAGAATGCAGCTATTGCCAGCAAAAGTTTGACTTTCCAAGTGTGTTGAAAAGGCATGTGAGGTCGCACACAAACGAACGACCGTATGTCTGCCAGATATGCAATAAGAGCTTCAAACAGTTGGGGCACCTCAGTCAACACTCTTTAACTCATACGGATTATCGTTCCTTCCAATGTGCGAAGTGCGGCATAAAGTTTGAGTCCTTGGacagtttgaaaatacatTCACAATCTCATAAGGGTGATACAGTCATGTACAGGCCAAAAGAAGTGTACCGTTTATTTGAATGTGATAATTGCAAAAAAGTATTCACAACCAAGAGTGTGTTGGAAAGACACATATTTACACACACTCACGAACGTCAATTTGGTTGCAAAGTTTGTGGAAAAAGGTTCAAACAGGCTGGGCATGTCAAGTCTCACATGTTGGTACATACGGGGGAGCGAAAGTTTGAATGCAAAGTTTGCTCGAAAAGGTTCAGCCTTTCAAATTCTCTCAAAAAACATATGTACATTCATAATGGAGAAAAACCTTATCAATGCGATGTGTGCGGTGCTCGATTTCTTgagaaacgaaatttaaaTGGTCACCTAATGACTCATACAAATGAACGACCATTTTCATGTAATATCTGTGGCAAGAGATACACCCTTGCTGATACACTCAGGCGCCACGTCAGTGCAGCTCATGAAGATGGACGGACTTACCAGTGTGAGATTTGTGCTAAGATGTTTAAACAACTAGCTCACTTGTATGTGCATAAAAAAGTTCACACAGATGAACGACCCTATCAATGTCACctatgcgataaaaatttcaagcatAAGAACGTTTTGAAGTCTCACTTGGCTATACACGCCAACCTGCGACCATTCGAATGCGATGTATGCAAAGCTACATTTGTTAGAAAAACTAATCTTCAGACTCATATAGCTTCTGCACACATGAACGAGAGACCATATGTCTGTACAATTTGTAATAAACGATTTAAACAAGTAAGCCACTTGAACGGTCATGTTGTTGTACACAGTAATTCTATGCCATATCAATGTGATTTTTGTGATCGGCGTTGTAATAGATTGGATAACTTAAAGAAACATATGCGTCTCCACACAAAGACTAAAGAATAG
- Protein Sequence
- MKQEMDFLDVNMCSEPTIMQINSNKPLMEQRTNENGRSVLSRGVQNALTNLDCDTTRQSLESNLYQKPEKERPTTEHMNSRCQVDIIDMRSDQHADYRFILAFEDQESKFVILRPLKSNDAKDVAVELFDILAIIGAPRVLQSGNGRQFASKIVYALRSLWTDLPMVHGDLVLPSTSVKRDFTTLLKNWLHDNPAKTWCEGLRFVQIIENTTFKQESGRTAHELLFVNNVLDDSKTAITKEDMKMIWSEEDLQEALNHQQESIQSTNHTSSSKLIVNNYGEQILPNNPVSYTEENLPMKEDTTDPDSTEFERQTRQLTAHCNNSSGFKFVNVKNESPLNVSLADDSQSDDEVTVTSQGKTRSRNKYQLKCKICQKRYMKLGHLKNHLKAHTKANKFECTICSKKFRLVTVYEKHMRQFHSSEKTSFDARYARIGEGLESDTEETLKSKRLKKVEPENDESSQIHCKKVTKKVGRQSSQLGGKKLSRENRATRVNGSPPLECSYCQQKFDFPSVLKRHVRSHTNERPYVCQICNKSFKQLGHLSQHSLTHTDYRSFQCAKCGIKFESLDSLKIHSQSHKGDTVMYRPKEVYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLVHTGERKFECKVCSKRFSLSNSLKKHMYIHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCNICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLYVHKKVHTDERPYQCHLCDKNFKHKNVLKSHLAIHANLRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICNKRFKQVSHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKTKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00175227;
- 90% Identity
- iTF_00174478; iTF_00175227;
- 80% Identity
- -