Acor001505.1
Basic Information
- Insect
- Athalia cordata
- Gene Symbol
- KRBA2
- Assembly
- GCA_963932425.1
- Location
- OZ010625.1:17840684-17843580[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00053 0.044 14.3 3.1 2 23 369 390 368 390 0.96 2 15 0.039 3.2 8.4 1.2 2 23 397 419 396 419 0.94 3 15 8.9e-05 0.0074 16.7 0.8 2 23 501 522 500 522 0.97 4 15 5.8e-06 0.00048 20.5 2.3 1 23 528 550 528 550 0.98 5 15 0.0003 0.025 15.1 0.3 1 23 556 578 556 578 0.98 6 15 9.8e-07 8.2e-05 22.9 1.4 1 23 594 616 594 616 0.98 7 15 6.5e-06 0.00054 20.3 1.2 3 23 624 644 622 644 0.98 8 15 1.1e-05 0.00094 19.5 2.2 1 23 650 672 650 672 0.98 9 15 0.0008 0.066 13.7 0.2 1 23 678 700 678 700 0.99 10 15 1.8e-05 0.0015 18.9 0.2 1 23 706 729 706 729 0.92 11 15 2.9e-05 0.0024 18.2 1.5 1 23 735 757 735 757 0.98 12 15 0.00098 0.082 13.4 4.1 1 23 763 785 763 785 0.98 13 15 5.9e-06 0.00049 20.4 0.2 1 23 791 814 791 814 0.96 14 15 1.3e-05 0.0011 19.3 0.9 1 23 820 842 820 842 0.96 15 15 3.5e-06 0.00029 21.1 4.5 1 23 848 870 848 870 0.99
Sequence Information
- Coding Sequence
- ATGAAACAAGAGATGGACTTCCTTGATGTCGATATGTGTTCCGGGCCAACCATAGtgcaaaataatttgaacaaaCCTTCGATGGAACAAAGAGCTAATGAAAATGGCCAATCTCCGACATCCATGGGGGACCAAAATGCTCTCACCAATTTGGACTGTGATACCACGAGCCAAAGTATGGAGTCTGATCTTTAccaaaagcaaaagaaagaaaaattgtcaacTGAACGTATAAAATCTCGATGTCAAGTTGATATTATTGATATGAGAAGTGATCAAAATGCGGattttagatttattttaGCTTTTGAAGATCAAGAATCCAAGTTTGTTATTCTTCGGCCATTGAAAAGCGATGACGCCAAAGATGTGGCGGTAGAGTTGTTTGATATCTTTGCAATTATTGGAGCCCCCAGAGTTTTACAAAGTAATAATGGCAGAACATTTGCCAGCAAAATAGTTCTTGCATTAAGATCGATATGGACAGATCTTCCATTGGTACACGGAGATATAGTGATACCTTCGACCAGTATCGAACGAGACTTCAAAACCTTGTTAAAAAACTGGCTTTATGATAACCCAGCAAAAACATGGTGTGAGGGGTTGCGATTTGTTCAAATGATCGAGAATACTACATTTCAGCGACAATCTGGAAAAACATCTCACGAGCTGCTATTTGTAAACAATGTTCTTGATGACTCTAGAACATTTATTACTAAAGAAGATATGAAGATGATATGGAGCGAAGAGGATTTGCAAGAAGCATTGAGCCATCAACAGCGAAGTATTCAATCAAACAATCACACAACCAGCTCAAAACTTTTAGTCAATaattacagagaaaaaatgttgtctAATAATCCAGTCAGCTACACCGAAGAGGATctcCCCATCAAAGAAGATATCACAGATCCAGAGAGTACCGAATTTGAGAGGCGAACTAGACAATCGACCGCGAATTGTAATAATTCTAGTGGATTCAAGTTTGTGaatgttaaaaatgaaagtcCATTGAATGTTTCGCTAGCAGATGATTCCCAATCAGACGACGAAGTAACTGTGACGTCTCAGGGTAAAACAAGATCAAGAAATAAGTACCAATTGAAGTgtaaaatttgtcaaaaaagATACATGAAGTTGGGTCATTTGAAGAATCACCTTAAGGCACATACGAAGGCGAATAAATTGGAGTGTACAATATGCTCCAAGAAGTTCCGGCTTGTCACCATATATGAAAAACATATGCGTCAATTTCATAGCTCTGAAAAAACTTCGTTTGATGCCAGATCCGCTAGAGTCGGAGAAGGCCTAGAAAGTGATACagaggaaaatttgaaatctaaAAGACTTAACGTTAGAGTTGAGCCCGAAAATGAGGAGTCCAGCCAAATTCATCACAATAAAGTTACGAAAAAAGTTGGGAGACGGTCAAGTCAGCTAGGTGGCAAGAAACTAACCAGAGAAAACCGAGCTACCAGATTAAATGGTTCACCTCTGTTAGAATGCAGCTATTGCCAGCAAAAGTTTGACTTTCCGAGTGTGTTGAAGAGGCATGTGAGGTCGCACACAAACGAACGACCGTATGTTTGCCAGATATGTAATAAGAGCTTCAAGCAGTTGGGACATCTCAGTCAGCACTCTTTAACTCATACAGATTATCGTTCCTTCCAATGTGCGACGTGTGGCGTAAAGTTTGAGTCCTTGGATAGTTTGAAAATACATTCACAATCTCACAGGGGTGATACCGTCATGTACAGGCCAAAAGAAGTGTACCGTTTATTTGAATGTGATAATTGCAAAAAAGTATTTACAACTAAGAGTGTGTTGGAACGTCACATATTCACACACACTCACGAACGTCAATTTGGCTGTAAAGTTTGCGGGAAAAGGTTCAAGCAGGCCGGGCATGTAAAGTCTCACATGCTGGTACATACAGGGGAGCGAAAGTTTGAATGCAAAGTTTGCTCGAAAAGGTTCAGCCTCTCAAATTCTCTTAAAAAACATATGTACATCCATAATGGCGAAAAACCTTATCAATGCGATGTGTGCGGTGCTCGATTTCTTGAAAAGCGAAATTTAAATGGCCACCTCATGACTCATACAAATGAACGACCATTTTCGTGTAATATCTGTGGCAAAAGGTACACCCTTGCTGATACTCTCAGACGCCACGTCAGTGCAGCTCATGAAGATGGACGGACGTATCAGTGTGAGATTTGTGCTAAGATGTTCAAACAACTCGCTCACTTGTATGTGCATAAAAAAGTCCACACAGATGAACGACCCTATCAATGTCACCTTTGTGCTAAAAATTTCAAGCACAAAAACGTTTTGAAGTCTCACTTGGCTATACACGCCAACTTGCGACCATTCGAATGTGATGTATGCAAAGCTACATTTGTTAGAAAAACTAATCTTCAGACTCATATAGCCTCTGCACACATGAACGAGAGACCATATGTCTGTACAATTTGTAATAAACGATTTAAACAAGTAAGCCACTTGAACGGTCATGTTGTTGTACACAGTAATTCTATGCCATATCAATGTGATTTTTGTGATCGGCGTTGCAATAGATTGGATAACTTGAAGAAACATATGCGTCTTCACACCAAGACTAAAGAATAG
- Protein Sequence
- MKQEMDFLDVDMCSGPTIVQNNLNKPSMEQRANENGQSPTSMGDQNALTNLDCDTTSQSMESDLYQKQKKEKLSTERIKSRCQVDIIDMRSDQNADFRFILAFEDQESKFVILRPLKSDDAKDVAVELFDIFAIIGAPRVLQSNNGRTFASKIVLALRSIWTDLPLVHGDIVIPSTSIERDFKTLLKNWLYDNPAKTWCEGLRFVQMIENTTFQRQSGKTSHELLFVNNVLDDSRTFITKEDMKMIWSEEDLQEALSHQQRSIQSNNHTTSSKLLVNNYREKMLSNNPVSYTEEDLPIKEDITDPESTEFERRTRQSTANCNNSSGFKFVNVKNESPLNVSLADDSQSDDEVTVTSQGKTRSRNKYQLKCKICQKRYMKLGHLKNHLKAHTKANKLECTICSKKFRLVTIYEKHMRQFHSSEKTSFDARSARVGEGLESDTEENLKSKRLNVRVEPENEESSQIHHNKVTKKVGRRSSQLGGKKLTRENRATRLNGSPLLECSYCQQKFDFPSVLKRHVRSHTNERPYVCQICNKSFKQLGHLSQHSLTHTDYRSFQCATCGVKFESLDSLKIHSQSHRGDTVMYRPKEVYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLVHTGERKFECKVCSKRFSLSNSLKKHMYIHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCNICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLYVHKKVHTDERPYQCHLCAKNFKHKNVLKSHLAIHANLRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICNKRFKQVSHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKTKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00174478; iTF_00175892;
- 90% Identity
- iTF_00175892;
- 80% Identity
- -