Basic Information

Insect: Athalia rosae
Gene Symbol: -
Assembly: GCA_000344095.2
Location: NW:82220-95211[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.5e-05 0.0043 16.7 1.4 1 23 471 493 471 493 0.96

2 18 1.4e-05 0.0009 18.8 1.9 1 20 499 518 499 521 0.94

3 18 2.2e-05 0.0014 18.2 0.7 1 23 527 549 527 549 0.98

4 18 5.3e-05 0.0035 17.0 4.4 1 21 555 575 555 577 0.95

5 18 1.6e-05 0.0011 18.6 4.6 1 23 583 605 583 605 0.99

6 18 1.6e-05 0.0011 18.6 5.3 1 23 611 633 611 633 0.97

7 18 6.2e-06 0.00041 19.9 7.1 1 23 639 661 639 661 0.97

8 18 6.1e-08 4e-06 26.2 2.7 1 23 667 689 667 689 0.98

9 18 4.5e-05 0.0029 17.2 6.7 1 23 695 717 695 717 0.97

10 18 1.4e-05 0.00091 18.8 5.8 1 23 723 745 723 745 0.98

11 18 3.7e-07 2.4e-05 23.8 2.9 1 23 751 773 751 773 0.98

12 18 5.5e-06 0.00036 20.1 7.8 1 23 779 801 779 801 0.98

13 18 1.7e-05 0.0011 18.5 9.1 1 23 807 829 807 829 0.98

14 18 2.3e-05 0.0015 18.2 7.5 1 23 835 857 835 857 0.98

15 18 0.0011 0.072 12.9 8.8 1 21 863 883 863 885 0.94

16 18 8.3e-06 0.00055 19.5 0.4 1 23 891 913 891 913 0.98

17 18 0.02 1.3 8.9 4.5 1 23 923 945 923 945 0.98

18 18 3.2e-07 2.1e-05 24.0 1.3 1 23 951 973 951 973 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.5e-05	0.0043	16.7	1.4	1	23	471	493	471	493	0.96
2	18	1.4e-05	0.0009	18.8	1.9	1	20	499	518	499	521	0.94
3	18	2.2e-05	0.0014	18.2	0.7	1	23	527	549	527	549	0.98
4	18	5.3e-05	0.0035	17.0	4.4	1	21	555	575	555	577	0.95
5	18	1.6e-05	0.0011	18.6	4.6	1	23	583	605	583	605	0.99
6	18	1.6e-05	0.0011	18.6	5.3	1	23	611	633	611	633	0.97
7	18	6.2e-06	0.00041	19.9	7.1	1	23	639	661	639	661	0.97
8	18	6.1e-08	4e-06	26.2	2.7	1	23	667	689	667	689	0.98
9	18	4.5e-05	0.0029	17.2	6.7	1	23	695	717	695	717	0.97
10	18	1.4e-05	0.00091	18.8	5.8	1	23	723	745	723	745	0.98
11	18	3.7e-07	2.4e-05	23.8	2.9	1	23	751	773	751	773	0.98
12	18	5.5e-06	0.00036	20.1	7.8	1	23	779	801	779	801	0.98
13	18	1.7e-05	0.0011	18.5	9.1	1	23	807	829	807	829	0.98
14	18	2.3e-05	0.0015	18.2	7.5	1	23	835	857	835	857	0.98
15	18	0.0011	0.072	12.9	8.8	1	21	863	883	863	885	0.94
16	18	8.3e-06	0.00055	19.5	0.4	1	23	891	913	891	913	0.98
17	18	0.02	1.3	8.9	4.5	1	23	923	945	923	945	0.98
18	18	3.2e-07	2.1e-05	24.0	1.3	1	23	951	973	951	973	0.97

Sequence Information

Coding Sequence: atgaacgggGAGCAGCATGTTTTGCCAGCGACTACGCAGGGGCAGCAAGAGGAAGTAAACGTGGGTCAAAGTGGTCGCTCTTCGTACCCAAGTGGATTGGCCACTGGATCTACGCTTGGAAATGTGGGAAGTATTCCCCATTCGTCAGCAGATCTACGCGTAGGTACAGCAGTAGCCTTAGCCTCTTCGGTAGCTAAATATTGGGTCCTGACCAATCTGTTTCCTGGGGGGCCGCTTCCTCAGGTTTCCGTATATCACCATCCTCACCATAATTCCTCGCATCGAAGCACCAGTGGTGATCCTGCAAACAAGGAATCTGCTTCTTCCTTAGCTCAAGAAATGGCCATGGCTCCAACTTCTCACCAACAGGCTTCTACTTCACATCACCATCAACAAACTTCAGTTAATGCCAACAATCAACATAACTCCCTGCATCCGAATGCACAGATTCCAGTATCCCTGCCTGGTTTGGGCTTAGACGGAACCCACTTACCTGCAAGTGTCAGTCACTTGCACGCCGCACATGCGCAAATGCAGCAACAAATGCAGTCACAGCAGCAACAActgcatcagcagcagcagcaacagcagcaacaacaacagcaacagcagcaacaacaacaacaacaacagcagcagcagcagcagcagcagcaacagcagtcCCATCATCAAATGCAGAATCATCAGAATAATCAAAATAGTGGACATAGCCCTCAAAATCAGCCTAGCAGCCAACGTgacgaaaataaagtaaaagatGAAGGTGGTAGCTGTACTACGGAAAGATGTAGCGATAATCAAGTGCACTGTCAGGTTCAATGCGATCTACAGTTGCAACCTCAGGCACAGTCAGATATGCAACAAAATCtaatgcagcagcagcaacaacagcaacaacaaatCGGAGTGACTATTAGTGGCAATAGTTCGACCGATGCTGGAAATCAAAACAATTCCGATACCTTGAAAACTGAGAAAGACAAGGAAATGCGCCAGCAGAGCATGGCACAATTTCAGTTACCTGACCTCAAACCTGGGGGTCATATGATGGATGTCAGAACAGCTGATGGTTCAGTTGTAAAAATAAGTGCTGGAAGCGAGCAGGATCTTGCCAAGACACTTGGCGTTGAAATGGTACAAAATATGTACAAGAACATTTTTCCTTCGCAGGTCAACGTTGAAGACATCAATCAGCTACTGGCTTACCACGAAGTTTTTGGTAAGCTGCAGAGTGAAATTGCAGCTGGAACAACATTGGTGGGTGGAACCGTACCTACCCAAACTGTAACTACAATACAGAACGGAACCCCAATTGTGCAACAGGTGCAGCTAAACAAATTTGATATCAAGACAAGTGATGGTGAGGCAACCCCAGGACCAAGTGCATCTCCCGTCTCCGTAGGTAGCCATGCCTGTGAAGTCTGTGGCAAGATATTCCAATTCCGTTATCAGCTAATCGTGCATCGCAGATATCACACCGAACGGAAACCCTTCACATGCCAGGTTTGTGGTAAAGCATTTACAAATGCTAACGACCTCACACGGCATGGTAAGTGCCATCTTGGTGGATCAATGTTTACATGTGCAGTCTGTTTCCATGTATTCGCAAACGCGCCGTCATTGGAGCGGCATATGAAACGGCACGCAACCGACAAACCCTACAACTGTACAGTTTGTGGAAAAAGTTTCGCTAGAAAAGAACACTTGGATAACCACACTCGATGTCATACCGGTGAAACGCCTTATAGGTGTCAGTACTGTGCAAAGACGTTTACACGCAAAGAACACATGGTGAATCACGTGCGAAAGCATACAGGTGAGACTCCACATCGCTGCGACATTTGCAAAAAGAGTTTTACTAGGAAAGAGCATTTCATGAACCACGTTATGTGGCATACCGGAGAAACTCCGCATCACTGCCAGGTCTGTGGAAAGAAGTACACAAGAAAGGAACATTTGGCTAACCATATGCGATCACACACCAATGATACACCCTTTCGTTGTGAAATTTGTGGTAAGTCGTTCACACGGAAAGAGCACTTCACGAACCACATAATGTGGCATACCGGCGAGACACCGCATCGCTGTGATTTCTGCTCAAAGACGTTCACTCGGAAGGAGCACCTCTTGAACCACGTTCGCCAGCACACGGGTGAGTCCCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAATCACATCCGCCAACACACAGGGGAAACGCCATTTCGCTGCCAGTACTGCCCAAAGGCCTTCACACGTAAGGATCACCTGGTTAATCACGTTAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCGTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACATACAGGCGAATCGCCACACCGATGTCACTTCTGCTCCAAGTCGTTTACTCGAAAAGAACATCTGACCAATCACGTTCGAATTCATACCGGAGAATCCCCGCACAGATGCGAATTCTGCCAGAGAACCTTTACCAGAAAAGAGCACCTTAATAATCATCTCCGCCAACATACCGGTGAATCTTCACATTGCTGCAATGTCTGTTCCAAACCGTTTACAAGAAAGgaaCATCTCGTTAACCACATGAGATGTCATACTGGCGAACGCCCGTTCGTATGTACCGAGTGTGGCAAAAGTTTCCCTTTGAAAGGAAATCTTTTGTTCCATATGCGTTCTCACAACAAAGGAAGCACTGCGGAGAGACCATTCAGATGTGACCTCTGCCCGAAAGATTTTATGTGCAAAGGTCACTTGGTTTCCCATAGACGCTCCCATTCGGATGAAAGACCTCACAGTTGTCCGGATTGCGGAAAAACCTTtgttgaaaaaggaaatatgtTGAGGCATTTGAGAAAACACGCTGCCGAGGGACCTCCTACCCAAGTCAGCACGCCTTCCGCTATCCCTCAACCAGGAGTATTGCCAATACCAACTGCTGCCGTCTTGGTTGGACATCCTCTGGCCCCTTCAGCACCACCAGTTGTGCCCCAACACACTGTGGTTGTTCCAACACCACCCGGAGTGTTGACGTCGTATTAA
Protein Sequence: MNGEQHVLPATTQGQQEEVNVGQSGRSSYPSGLATGSTLGNVGSIPHSSADLRVGTAVALASSVAKYWVLTNLFPGGPLPQVSVYHHPHHNSSHRSTSGDPANKESASSLAQEMAMAPTSHQQASTSHHHQQTSVNANNQHNSLHPNAQIPVSLPGLGLDGTHLPASVSHLHAAHAQMQQQMQSQQQQLHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSHHQMQNHQNNQNSGHSPQNQPSSQRDENKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPQAQSDMQQNLMQQQQQQQQQIGVTISGNSSTDAGNQNNSDTLKTEKDKEMRQQSMAQFQLPDLKPGGHMMDVRTADGSVVKISAGSEQDLAKTLGVEMVQNMYKNIFPSQVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGGTVPTQTVTTIQNGTPIVQQVQLNKFDIKTSDGEATPGPSASPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNANDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGESSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSTAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQPGVLPIPTAAVLVGHPLAPSAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00060523;
80% Identity: -