Basic Information

Insect: Athalia cordata
Gene Symbol: -
Assembly: GCA_963932425.1
Location: OZ010628.1:16346257-16349847[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0045 0.37 11.4 3.0 1 23 108 131 108 131 0.97

2 13 0.01 0.84 10.3 4.6 2 23 261 283 261 283 0.91

3 13 0.00023 0.019 15.4 1.2 2 23 362 384 361 384 0.96

4 13 5.6 4.7e+02 1.6 7.6 3 23 472 493 471 493 0.95

5 13 3 2.5e+02 2.5 0.9 1 23 543 566 543 566 0.92

6 13 6.4e-06 0.00053 20.3 0.1 3 23 615 636 614 636 0.95

7 13 0.00069 0.057 13.9 1.0 2 23 663 685 662 685 0.90

8 13 0.0074 0.61 10.7 3.6 2 23 730 752 729 752 0.96

9 13 0.1 8.3 7.1 4.2 3 23 767 788 765 788 0.92

10 13 7.9e-05 0.0066 16.9 0.4 2 23 835 857 835 857 0.96

11 13 0.054 4.5 8.0 0.8 1 23 936 958 936 958 0.98

12 13 0.0001 0.0085 16.5 0.3 2 23 975 997 974 997 0.96

13 13 0.0043 0.36 11.4 0.4 1 23 1075 1098 1075 1098 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0045	0.37	11.4	3.0	1	23	108	131	108	131	0.97
2	13	0.01	0.84	10.3	4.6	2	23	261	283	261	283	0.91
3	13	0.00023	0.019	15.4	1.2	2	23	362	384	361	384	0.96
4	13	5.6	4.7e+02	1.6	7.6	3	23	472	493	471	493	0.95
5	13	3	2.5e+02	2.5	0.9	1	23	543	566	543	566	0.92
6	13	6.4e-06	0.00053	20.3	0.1	3	23	615	636	614	636	0.95
7	13	0.00069	0.057	13.9	1.0	2	23	663	685	662	685	0.90
8	13	0.0074	0.61	10.7	3.6	2	23	730	752	729	752	0.96
9	13	0.1	8.3	7.1	4.2	3	23	767	788	765	788	0.92
10	13	7.9e-05	0.0066	16.9	0.4	2	23	835	857	835	857	0.96
11	13	0.054	4.5	8.0	0.8	1	23	936	958	936	958	0.98
12	13	0.0001	0.0085	16.5	0.3	2	23	975	997	974	997	0.96
13	13	0.0043	0.36	11.4	0.4	1	23	1075	1098	1075	1098	0.98

Sequence Information

Coding Sequence: ATGGCGTCGACGATAGCTCGGGGTCCTTCAATTCCGGAATCCGGTGACGTGGAAAGCGATGGTTCGAGCTGCGAAGAAAGGGACACCTTGAAACGACCCCACGGTGAGGTAGACTTGACGGGTgctaaaaaacgaagaaaacaatCGACTCCGGTTCGTTTTCCGTCATCTTTAATTGCGGAGGAacgtgaagaagaagaagaagaagaagaggaagaatcTGAAGAAGAAGGCGCAGTTTGTACGGATGTCGACAACGAAGGTAAGACAACGGTTGAACGGATCCACCAGACGTCAAAggacgaaaatttgaataacgaaTTCCGATGCCAATATTGTAGTCTATTGTTTGATAGCAAACAAATGCTTAATCATCATCTTAACAGCGAACACGATATTTCACGGCAAAGTCTTCAACGATCGCCGGTTCATTCGCAAATTCAAGTTAAACAGGAATTTAATCAAAATCAGGAACAGGCCGAATGTCCTGTCAACCTTTCGGGTATCGGTATTAAAAGTTTCGCAGCAACATGGTTGTCGGGTCATGTTCAATCTCAGTCACAACAAATTCAATTGCAATCACAAACGGATGAATGGCCGCCTTCTGGGTCAGCTGGTTCCTTGTCCTCTATTTCCAACCATCTTCAAGCTCTACCCTTCCCAGGTGCCCTCGCTCAGTATCTTCCTTTGCCGAATTTTTCGCTAACTGCAGACTCGAGCCAGGTACCAAATAGACCACCGATAGGTCCAGCGCCCATGAGGATATTCAACCCTGACGCCTACTGTGACCTTTGTAACAAAGAATTTTGCAATAAGTATTTTTTGAAGACACACAAAGCAAATAAACACGGTATCTACGTTGATACTCCTGGACAAACAGTTGGCGAATCGGGTTTCACGGGGTCAGGATACTCAGGATCTTTTTTGGCAACTGGTATGAAACtggagcagcagcaacagcaacagcagcagccgccGCCGCCTCAACAACATCAGCCGTCACAGATGAAATTAGAACCGTCAACAATTCCGGCGGTACCTTCGGGTCAGCCGGTTCTTCAAGCGCCACCTGTTCTGAATTCGGTCTGTGAAATTTGTCagaaaagatttaaaaacGAAGAATCTGTTAGAAAACACAAACAAAAAGTCCACAATGGCGACGTCAGTGATTCGGGTGATGCGTTGATGCTTCCACCCCAGACAAACGAAGATGACAGGGAAACTTCGCACCATAGTCTGAGCCCTGGCGCTATGGAAGCACTTTTCAAACAAGAATTTGGTGTGGAACAAGAAGACACCACATTTATGCCTGCGCCAAGGCACCTGTCTCCTCAATCGGTTCAGCAAGCCAGAGATTCAGGTTTTAATGCCGACCGTTTGAGGAGATTGGGAGTTATAAATCCTGAAGCTTTTTGTGAAATCTGTTGTAAAGAATATTGTAACAAGTATTTTTTACGTACACATAAAATGAAGAGACACGGTGTGGTTATCcaggataatgaaaaatcgccgAGTAATCCTGGAGCTGCTGCTGCGTGGCATCACGTACAGACCAGTCCGCTGAATTTGATAGTAGGTGAAACTAGTGGTAATAGTTCGGAATCAGGTGACCGTTTGGGTGATGATTACGAGTGCAAACCGTGCGGTATCAGATTTCAAACAATGGGGTTGCACCAGGCGCATCGTCAGAAAATACAcgaaatggaagaagaaagatcACCGAAACAGGAAAATGATAACGATACCAACGACCAAAGAGGGGATTCGATTAGCGAAGATCTTCAGAAGCTACAAACCATGATTTTACAATTGAATGGTTTAGAATCTGGAAGAGGAGCGCCGTGTCCGATCTGTGGAAAGGATTTCGACTCGAGACAGTCCCTGAGAAATCACATGACCGTGGAACACGGTGCAGTCGTTGACGATACGGTTTCTTCGCCGATTcagggaaatgaaaaatcaccgACTCCGACAAGCGGACCCTTGAATTGTACCTTTTGTGATAAGGAATTCTTCAGTCAAGAAACTCTTAGAAAACATGTTACCGAAGATCACCAACCCTCCACACCAACTTCCGCTCCGTTACCCACGGTGCTTCCAACCCCAGCAACGACTTTAACTCCAACAACACCAACCGCTCAAAATCAAGAACGAAGAACATCGGTTTCCATGACACCGACGTCTAGTTACTGCGAAATTTGTAACAAGGAATTATGCAACAAATACTTCATGAAGACACACATGCAGAGGATGCACGGAATCGAGATAGAAAATGGTGCACAAATCGGCGGTGTTATATGTAATATCTGCAACAAAGAATTGTGCAGTAAATATTTTCTCCGTGTTCACAAACACAACACACATGGAATCATCGAAGAAGGTTCAACGCCAACAAGTTCAGCAAAGCAGGTGGACAATGACACCAATAATAGCGAAGATCCTGCCCTGAAACCGGAACAACTCGGTGATTTGAGTCATCGTTACTTCACTCATTTCACGGAAGTGTGTCCCATCTGTAGTAGAAGATTCAGAAGTACAAAATGGCTAAAAGCACATTTACTCAGCGATCACGGGAAGACCGGAATAGATAAATGGCGAGAATTGGAACAGCAATATCAGTCGGGTCCACGTAGTGGTAGAACTCCGGGTCCGTCGAGAGTTCCTCATTCTCAAAATCCAAGTTTGAAAATACCAAATGGTATAGAACTGGCCGCTCAGCATTTGAAAACTGGAGATTACGCTGGATTGGGTAATCAAGTGTTATCAACTCTTTTCGGATCGACCGAAGATCAACAAATGAAAAGTTACCGTTGTTCTTATTGCACTTTCACAACTCCAGTTCTAGCTTTCCTATTCGTTCACGAGCGATCGCATACGAGTCCACAAAGTTCAGGTTCGGTAATCGAAGCTGAAAGAACACTTCAATGTCCTGTTTGTCTTCAGGGTTTTTCACAGCCTGAACTACTTCAACATCACCTTTTAACTCAACATCAATTTCCCGGTCTAATTCCTCCGTTCCAGCCGCATCTGATGAACAATTCTCGACCGGAATCATCGTCAGAAAAAGACAGTGAATCAAAAGACCGAACTGACCTTGATTCCAGGGATGATTTAATGAAACAATCGAGTCCTCAGACGTCCGGAAGTGCATCTTTCAACgatgttcaaaaaattcaaagaccAGAAGATGCCACGGCTGTTCAAGTTACACCTCAAGGTGCATATAAATGTGCCCAATGTGGTTACGCGACCGCAAATTTAAACCGTATTAAAAAACACATTCGAAAAGATCACAGGACAATTTCAACAACGGAACCATCGGAAACTGTAATCGGCGAATTAACTCGAACGTTAAAAGAAGTTTCGAACAAACATAAAATACCAGCAAGTTATGCGATGCCTCAGGACATGAATTCTAATCCTGAAAAAACGATAATGCAACCATTTTTGATCGAAGAATGCAGCGAAATCATTCACGGTACATCGGAATCAAattcagaaaagaaatttgcTCCAGCGCTCGTTTACTTGCCAGTAAAAACGCGAATAAATGCTCCATTAACGGCATCCTTCAATCTAAGTCCtgcctga
Protein Sequence: MASTIARGPSIPESGDVESDGSSCEERDTLKRPHGEVDLTGAKKRRKQSTPVRFPSSLIAEEREEEEEEEEEESEEEGAVCTDVDNEGKTTVERIHQTSKDENLNNEFRCQYCSLLFDSKQMLNHHLNSEHDISRQSLQRSPVHSQIQVKQEFNQNQEQAECPVNLSGIGIKSFAATWLSGHVQSQSQQIQLQSQTDEWPPSGSAGSLSSISNHLQALPFPGALAQYLPLPNFSLTADSSQVPNRPPIGPAPMRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDTPGQTVGESGFTGSGYSGSFLATGMKLEQQQQQQQQPPPPQQHQPSQMKLEPSTIPAVPSGQPVLQAPPVLNSVCEICQKRFKNEESVRKHKQKVHNGDVSDSGDALMLPPQTNEDDRETSHHSLSPGAMEALFKQEFGVEQEDTTFMPAPRHLSPQSVQQARDSGFNADRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGVVIQDNEKSPSNPGAAAAWHHVQTSPLNLIVGETSGNSSESGDRLGDDYECKPCGIRFQTMGLHQAHRQKIHEMEEERSPKQENDNDTNDQRGDSISEDLQKLQTMILQLNGLESGRGAPCPICGKDFDSRQSLRNHMTVEHGAVVDDTVSSPIQGNEKSPTPTSGPLNCTFCDKEFFSQETLRKHVTEDHQPSTPTSAPLPTVLPTPATTLTPTTPTAQNQERRTSVSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIIEEGSTPTSSAKQVDNDTNNSEDPALKPEQLGDLSHRYFTHFTEVCPICSRRFRSTKWLKAHLLSDHGKTGIDKWRELEQQYQSGPRSGRTPGPSRVPHSQNPSLKIPNGIELAAQHLKTGDYAGLGNQVLSTLFGSTEDQQMKSYRCSYCTFTTPVLAFLFVHERSHTSPQSSGSVIEAERTLQCPVCLQGFSQPELLQHHLLTQHQFPGLIPPFQPHLMNNSRPESSSEKDSESKDRTDLDSRDDLMKQSSPQTSGSASFNDVQKIQRPEDATAVQVTPQGAYKCAQCGYATANLNRIKKHIRKDHRTISTTEPSETVIGELTRTLKEVSNKHKIPASYAMPQDMNSNPEKTIMQPFLIEECSEIIHGTSESNSEKKFAPALVYLPVKTRINAPLTASFNLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00060630;
90% Identity: iTF_00174569;
80% Identity: -