Basic Information

Insect: Athalia cordata
Gene Symbol: -
Assembly: GCA_963932425.1
Location: OZ010627.1:8465590-8468976[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.0051 0.43 11.2 2.0 1 23 52 74 52 74 0.95

2 21 2.8e-07 2.3e-05 24.6 2.3 2 23 81 102 81 102 0.98

3 21 1.7e-06 0.00014 22.1 5.7 1 23 131 153 131 153 0.98

4 21 0.00021 0.018 15.5 4.4 2 23 159 180 158 180 0.97

5 21 0.014 1.2 9.8 0.0 1 23 185 207 185 207 0.98

6 21 5.4e-07 4.5e-05 23.7 0.7 1 23 215 237 215 237 0.98

7 21 0.12 9.6 6.9 3.4 3 23 245 266 243 266 0.93

8 21 0.00023 0.019 15.4 0.3 3 23 279 299 277 299 0.96

9 21 1.4e-06 0.00012 22.4 2.6 1 23 305 327 305 327 0.96

10 21 3.7e-08 3e-06 27.4 0.2 1 23 333 355 333 355 0.98

11 21 2.7e-07 2.2e-05 24.7 0.9 1 23 361 383 361 383 0.98

12 21 0.0017 0.14 12.7 2.6 1 22 389 410 389 414 0.94

13 21 0.00044 0.036 14.5 2.0 3 23 586 606 584 606 0.97

14 21 0.0067 0.56 10.8 5.2 1 20 612 631 612 634 0.95

15 21 0.0015 0.13 12.9 3.1 1 23 640 663 640 663 0.96

16 21 2e-05 0.0017 18.7 1.9 1 23 670 692 670 693 0.95

17 21 3e-05 0.0025 18.2 0.9 1 23 699 721 699 721 0.98

18 21 0.016 1.3 9.7 3.7 1 23 728 750 728 750 0.97

19 21 8e-06 0.00066 20.0 2.6 1 23 754 777 754 777 0.97

20 21 5.6e-05 0.0047 17.4 0.4 3 23 785 805 783 805 0.97

21 21 2.6e-07 2.1e-05 24.7 1.0 1 23 811 833 811 833 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.0051	0.43	11.2	2.0	1	23	52	74	52	74	0.95
2	21	2.8e-07	2.3e-05	24.6	2.3	2	23	81	102	81	102	0.98
3	21	1.7e-06	0.00014	22.1	5.7	1	23	131	153	131	153	0.98
4	21	0.00021	0.018	15.5	4.4	2	23	159	180	158	180	0.97
5	21	0.014	1.2	9.8	0.0	1	23	185	207	185	207	0.98
6	21	5.4e-07	4.5e-05	23.7	0.7	1	23	215	237	215	237	0.98
7	21	0.12	9.6	6.9	3.4	3	23	245	266	243	266	0.93
8	21	0.00023	0.019	15.4	0.3	3	23	279	299	277	299	0.96
9	21	1.4e-06	0.00012	22.4	2.6	1	23	305	327	305	327	0.96
10	21	3.7e-08	3e-06	27.4	0.2	1	23	333	355	333	355	0.98
11	21	2.7e-07	2.2e-05	24.7	0.9	1	23	361	383	361	383	0.98
12	21	0.0017	0.14	12.7	2.6	1	22	389	410	389	414	0.94
13	21	0.00044	0.036	14.5	2.0	3	23	586	606	584	606	0.97
14	21	0.0067	0.56	10.8	5.2	1	20	612	631	612	634	0.95
15	21	0.0015	0.13	12.9	3.1	1	23	640	663	640	663	0.96
16	21	2e-05	0.0017	18.7	1.9	1	23	670	692	670	693	0.95
17	21	3e-05	0.0025	18.2	0.9	1	23	699	721	699	721	0.98
18	21	0.016	1.3	9.7	3.7	1	23	728	750	728	750	0.97
19	21	8e-06	0.00066	20.0	2.6	1	23	754	777	754	777	0.97
20	21	5.6e-05	0.0047	17.4	0.4	3	23	785	805	783	805	0.97
21	21	2.6e-07	2.1e-05	24.7	1.0	1	23	811	833	811	833	0.98

Sequence Information

Coding Sequence: ATGCTATCGAAGCTCGACCTGGTCAAGAACAAGAAACCGGATGAAGGTGCTCAGAAAGTTGGGGCCGCTGACCAAACATCAAGCGTTGTAAACGCTCCTATAAAGGAAGAATTgaaagacgacgacgacgatgaagaCGATATGCCCCTGGCTTACCACTGCAAGACCTGtgctgtatttttcaaaactaaagATCTGCTGAACAATCATGAAATCGAGCATaaggggaaaagaaagaatactTGCAACCAGTGCGGGAGAGTTTTTCGAACTTACGTTAATCTTAGAAAACATATGAAGAAGCATGCCggcaataaaaataagaacgaGAGTAGGCCGGTGGTGAATGTTGACCTACATGTGAAAACAGAGAAGAGCGAAAATACTGACTTTGTTTGCAAAACTTGCAATAAAGTATTCCGTCACAAAAGCAATTATCAGAAACATTTGCTCAGGCATACCGCGGGCGACCTTACCTGCAATCATTGTCCGAAAAAGTTTCGTCTATTTCGAGATCTCACTCGACATGAAAAGACGCATTTTTATCCAAGCTACATGTGCAAAGAGTGTGACTACGAAACAACCGTTGTCGCAGCTCTTGGTATCCACATGTTGAGACACACAAACAAGTCCGATCTACCTTATAAGTGCAACGATTGCGATAAGAGTTTTCGTAAAGCTATCGAACTCCAAGAACACTACAATATTCATTCTGGAGAAAAGCCATCCATTTGCACCATTTGCGGCACCGCTTTCCACCTGAGGAGACAGTTATCCGCCCACTGCAGACGATCACATCCAGAAATGAAGGCGAGTAAAGTGACGAGCACAGCCTGTGACATTTGCGGACGGGTATTAGCAACGAAACGTTCATTATTCCGTCATAAAGAAAGCCACAATCCGACAAAATTGTACTTATGCGATTACTGCGGAAAGAGTTTGAGCAGTTCGGAGCACCTAAAGAAACACCGGAGGATTCATACGGGGGAGAAACCCTACGTTTGCGATATTTGTGGCAAAGGATTTACAGATTCCGAAAATTTGCGGATGCACAGACGCATTCATACCGGAGAAAAGCCCTACAAGTGCGATCAGTGTCCCAAGGCCTTCTCACAGAGATCGACACTCACTATTCATCGGCGTGGTCACACGGGAGAACGACCATACATATGCCAAATTTGTCATCGAGGATTCTCCTGCCAGGGGAATCTTACCGCACATCAAAAATCTACGTATGTTCATTATCGTAACGTCACCTTGATTTATGCTAGAGTACCTTCTTTGAGTTTGATGCTAGCAGGAAGACTTCCTCCTTACTATATCCACGGATATGATTGGGAAGGTGAAAACTCTGAGGGTTCGTCTACACTAGATGCCTGGGACATTCCAATCCAAACAGAATACGACAGACCTGTTGAAAGTCAGCATAAACGTAAAAGGGGCATGATTTGGTGCATCCAAGGGAGGGGTCACCCAATGAAGAAGTACGCCCCGGCATTACGTACCAGCTTTGAAACAGTGAGCAAGAAGAGTAAGGTCGAAAATGGAAAGGGCAAAATATTTACTCCGATTAAACTCTTTAAGTTCAACAAAAAGGATGgagaaattgtgaaaaaagatGCTGAGAAGCTGTCCACCAAACCATCCACAGTTCGTGTGGAGACTAAAAGTATACAAGTAAAAAATGATGGAACTGATTCTGAAAGCGAGCTAACGGCCGCAGAACTTTTTGGCGACAACCCCAGTAATACTTTTTGCACAATATGCAACAGggatttcaaaaatagaagCATTCTCGGGAAGCACATGAGACGTCACAATACTCGAAGACCTTATAAATGTCCGAAGTGTCCTTCACGCTGTAGAAATAAACAGGATCTTGAGAGACATCTTCTCTGTCACGATAACCAGACATACTATTCCTGTGAGATATGCTATATAcgttacaaaacaaaacaagcgTTGAAAAACCACCATATAAGACGACATGATGACAGCGAGGGTCAATTTAATTGCGAGCAGTGTgataaaaagtttaaaataaaaggTGATCTCGGCACGCATATGAGGGTTCACCATGTCGATGGCACGGAATACGTCTGTGAGGTTTGCGGCAAATCTTTCAAGCTCTTGAAAGGATTAGTAGCCCATAAACGTCACCATAGAGTTAGCGTTTATAACTATCCATGCACAAAATGCAAGTGTAAATTTACTACAGATCTGAAACTTCAGAATCATTTACTTGAACATGAAAAAGGCTTCAAGTGCGAGCAGTGTAATAAAGAGTTCAACCAAAAGTCACGTCTCCAGTATCACATGCTCATGACGCACGGTAATCCCGAACCCCAGATATGCTCCATATGTGGAAAGCTGTACAAAAGCACCGGTAGCCTCCGAACACACATCTTAACACATGCTGGAGAACGACCTTACAAGTGCGATGTTTGCGGAGAATCCTTCACCCAGAGATCAAGTATGATGCGACATAGACGGGGACATCCTGGAAGATTTTCCCCTCCCCCGCCCATCCCCATCACGGAACTCATCAGAGATATCGAAGAAAAGGCTCATGCTTCAAATTAA
Protein Sequence: MLSKLDLVKNKKPDEGAQKVGAADQTSSVVNAPIKEELKDDDDDEDDMPLAYHCKTCAVFFKTKDLLNNHEIEHKGKRKNTCNQCGRVFRTYVNLRKHMKKHAGNKNKNESRPVVNVDLHVKTEKSENTDFVCKTCNKVFRHKSNYQKHLLRHTAGDLTCNHCPKKFRLFRDLTRHEKTHFYPSYMCKECDYETTVVAALGIHMLRHTNKSDLPYKCNDCDKSFRKAIELQEHYNIHSGEKPSICTICGTAFHLRRQLSAHCRRSHPEMKASKVTSTACDICGRVLATKRSLFRHKESHNPTKLYLCDYCGKSLSSSEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRIHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYICQICHRGFSCQGNLTAHQKSTYVHYRNVTLIYARVPSLSLMLAGRLPPYYIHGYDWEGENSEGSSTLDAWDIPIQTEYDRPVESQHKRKRGMIWCIQGRGHPMKKYAPALRTSFETVSKKSKVENGKGKIFTPIKLFKFNKKDGEIVKKDAEKLSTKPSTVRVETKSIQVKNDGTDSESELTAAELFGDNPSNTFCTICNRDFKNRSILGKHMRRHNTRRPYKCPKCPSRCRNKQDLERHLLCHDNQTYYSCEICYIRYKTKQALKNHHIRRHDDSEGQFNCEQCDKKFKIKGDLGTHMRVHHVDGTEYVCEVCGKSFKLLKGLVAHKRHHRVSVYNYPCTKCKCKFTTDLKLQNHLLEHEKGFKCEQCNKEFNQKSRLQYHMLMTHGNPEPQICSICGKLYKSTGSLRTHILTHAGERPYKCDVCGESFTQRSSMMRHRRGHPGRFSPPPPIPITELIRDIEEKAHASN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00174473;
90% Identity: iTF_00174473;
80% Identity: -