Acen058089.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- -
- Assembly
- GCA_905333075.2
- Location
- HG995396.1:8521658-8526817[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0012 0.19 14.0 0.9 1 23 5 27 5 27 0.93 2 20 0.016 2.6 10.5 0.4 1 23 100 122 100 122 0.98 3 20 0.0018 0.28 13.5 0.2 1 23 126 148 126 148 0.95 4 20 0.0081 1.3 11.4 0.3 1 23 153 176 153 176 0.95 5 20 0.0069 1.1 11.7 3.4 1 23 182 205 182 205 0.93 6 20 0.1 16 8.0 0.4 1 11 212 222 212 226 0.90 7 20 0.35 54 6.3 2.1 1 23 341 364 341 364 0.94 8 20 4.9 7.6e+02 2.7 0.2 2 23 389 411 388 411 0.79 9 20 0.16 25 7.4 0.1 1 23 435 457 435 457 0.93 10 20 0.00015 0.023 16.9 0.2 1 23 461 483 461 483 0.98 11 20 0.022 3.4 10.1 0.2 1 23 631 654 631 654 0.95 12 20 0.0085 1.3 11.4 0.3 2 23 680 701 679 701 0.96 13 20 0.024 3.8 9.9 0.3 1 23 723 745 723 745 0.98 14 20 0.0001 0.016 17.4 0.6 1 23 749 771 749 771 0.98 15 20 0.0011 0.17 14.1 1.4 1 23 776 799 776 799 0.93 16 20 7.1e-05 0.011 17.9 0.5 2 23 806 828 806 828 0.97 17 20 7.8e-05 0.012 17.8 1.1 1 23 835 858 835 858 0.98 18 20 0.007 1.1 11.6 4.7 1 23 864 886 864 886 0.97 19 20 2.8e-05 0.0044 19.2 2.8 1 23 892 914 892 914 0.97 20 20 0.16 25 7.4 0.5 3 23 919 940 918 940 0.95
Sequence Information
- Coding Sequence
- ATGAAAAATCTGTACATTTGcttctattgccatcaacagtTCTCTGACCCAGCAACATTGAGGGTACATAACATAGAACACGGTTTTCTGACGACATCGCAAGTCAAATATGCTTTGTCGAAACTTAAGAAGTATGAATTAGTCAAAGTAGATATAACCGATGTAGGTTGCAAGCTCTGCGATGACTTGATCCCAGATTTTCCGACCCTAAAATGGCATCTGCTAGAAAAGCATAAGAAGAATTTAGATCCTAAATCTGGCGATGGTGTCCTTCCGTTCAAAGTGACGGTCAACGAATTTCCATGCGCCCTTTGCTTAGAAAAATATACCGAGTTTAAGTCTCTTAACCAGCATATGAACGTACATttccaaaattttatttgtgaACAGTGTGGCACTGGTTTTATAACTCCTGAACGTTTGAGGACTCACGCGTTTTCGCACGAAACGGGATCGTTTCCTTGCGATAGTTGTGACAAAGTATTTAGGTCTACGAACGCGAAAAACGAACATTACGCTACTGTACATATGAAAGTAAAACGCCATAGATGTCCACATTGTTCGGAAGCATTTAGAAACTACTTTCAGAGAAATAAACACATTTCTGCCATCCATGGTTTGAAGTTGAAAGAATTCAAATGCACTATGTGTCCTAAAGTTTTCACTATTAGTGGATCGGACTCCGAAATACCTGATACGAAGCGAAGAATCATCCCGTTATTCCAAGTTTCTTACGACAGAAGCTTGTGTAGACCTCTCGGGACATTAATAGACTTCAGTAGATTCCGACAAAAGAGTATTAAAGTCTTCTCTCCACCTCCAATACGAGATTTCTCTCCGTCTCGCAGTCCATCTCCTGTATACCTAGGGACTGCACCATCGCCTTTTATTGATAGCATGCCAACTTTATCCGTCCAAACTGTGAAACCTAAAGTGAAGAAAACTCCAGATATTAGGCAGAACGCTCTGGCTGTGTTTGAGTTTTCAACGGTATATCCGTTTGTTTATGGGAGCAATAAGTTCAAATGTTTCGTTTGCTCGCAACCGTTTCTGGACTTGAACGAATTGAAGCTGCACATGCATTTCTCCCATACCTTCGCTCCTCTTAAGAGACTCGTTAATAATAGAAGAGAGAATGTCTTAAAAGTAGACGTAAGTGATATAACCTGCAAAATATGTTCAGAAAAACCTCTTAACCTGGTCGAACTCAAGCGTCACCTCAAAGAAGTACACGAAAAACCAATGGATTTAGAAATCCAAGACAATATGATACCGTTCAATCTCGAACTCGTAGACGATGCCTACAAATGCGTTATATGCGAACAAAGTTTCATAAAAGTTCGAATTTTAGTAATACACATGAGTGAACACTTCAATAATTATAGCTGTGAAATTTGTGGATCAGTCTTCATGACTTTACGGCTCTTGAAAAAACATTTAGAAGTCCATGACTCTGGTCCTATCATCCAGGAATCAAATTCAACGATCACTCTCAAAGACGAAGATGGAACAGAAATTAAACTCACAGTTCTCAAATATCCAATTTCTTTACAAGCTCTAGAATATGAAACTCAAGATATTACCGCCAACCATAACTTtaagaacaaacaaaaaaagaaaattggcaAAACGAAAGAAGTTAAGAAAAACAACGTCAAGTTAGAAAACATATCTTTACTGAAAGAACCAGTCTCTATAAATAATGTCGATTGGAAAAACCATAATCAGCAAGAAAATTCGGTAACATTCAATGTGAAAACTGTACAAGGATATATCCGTGCACCAACGAGACAACGAAGCGAAAACGTTGACTATGAAACCTGGAAACAGAATGCCTTAATCATCTTTGAAAACTCTTATGTCTATCCATTTATACATGCGGGTAACAAATACAAATGCGTCATCTGCTCCAAGCCCTTCCTAGATGCTAATCTCTTGAAAGACCATACATTAAACGAACATACTGGCAAAGAAATGAAACGAGCATTAAATAATAGGGTTAGGGACAAAAATCTCAAAGTCGACGTCACATATCTGCAGTGTAAAATCTGTTTGCAGTCACTACCTGATCTGCAGAACTTGAAAACCCATTTAAAGGACCATGGCAAGAAAATACAGCTGGATTTGCAAGATAATATAATACCTTACAAGCTAGGAGGTGAGAATTTCGAATGTCAAGTATGCGGGGAAAAGTATCTAAAACTACGACTCCTAATCATTCATATGAGTAAACATTTCAACAATTACAGCTGCGAAATATGCGGTTCTGTATTCATATCACTGCAATTACTAAAAAGACATTTACATATTCACGAATCAGGGAGCTTTCCCTGCAACAAATGCGATAAAGTGTTCACGAACTCCACAAAAAGGTCACTACACTACAAAGGAGTGCATCTGAAGCAATTCCCGCGAAGATGTCCGATTTGTCCCGAAAGATTCAACTCAAATTATCAAAGAACTAAACACTTGCGTATAGCACATAACCAATCGACTGGGTTATATCGATGTGACACATGTGGTCGGGAATACGACTTGAAATACCATCTTCTGGTCCACATAAGGTCTGTACATCTTCAAGAGAGGAATCATGAGTGCCCAATGTGTAGTTCAAGATTTTTCTCCAAGTACTGTCTTTCGAGGCATATGATTATACATACAGGGGAGAAGAATTTCAAATGTGAGATTTGTGGCAAGGCATATGCGAGGAGGAAGAACCTTCGTGACCATTGCAGGTCTCATGAAGTCGGATTGTGTGCTATTTGTGGTCTTAACTGTGGGGATCATAATAATCTTGTCGCTCATGTTAATAACGTGCATTGA
- Protein Sequence
- MKNLYICFYCHQQFSDPATLRVHNIEHGFLTTSQVKYALSKLKKYELVKVDITDVGCKLCDDLIPDFPTLKWHLLEKHKKNLDPKSGDGVLPFKVTVNEFPCALCLEKYTEFKSLNQHMNVHFQNFICEQCGTGFITPERLRTHAFSHETGSFPCDSCDKVFRSTNAKNEHYATVHMKVKRHRCPHCSEAFRNYFQRNKHISAIHGLKLKEFKCTMCPKVFTISGSDSEIPDTKRRIIPLFQVSYDRSLCRPLGTLIDFSRFRQKSIKVFSPPPIRDFSPSRSPSPVYLGTAPSPFIDSMPTLSVQTVKPKVKKTPDIRQNALAVFEFSTVYPFVYGSNKFKCFVCSQPFLDLNELKLHMHFSHTFAPLKRLVNNRRENVLKVDVSDITCKICSEKPLNLVELKRHLKEVHEKPMDLEIQDNMIPFNLELVDDAYKCVICEQSFIKVRILVIHMSEHFNNYSCEICGSVFMTLRLLKKHLEVHDSGPIIQESNSTITLKDEDGTEIKLTVLKYPISLQALEYETQDITANHNFKNKQKKKIGKTKEVKKNNVKLENISLLKEPVSINNVDWKNHNQQENSVTFNVKTVQGYIRAPTRQRSENVDYETWKQNALIIFENSYVYPFIHAGNKYKCVICSKPFLDANLLKDHTLNEHTGKEMKRALNNRVRDKNLKVDVTYLQCKICLQSLPDLQNLKTHLKDHGKKIQLDLQDNIIPYKLGGENFECQVCGEKYLKLRLLIIHMSKHFNNYSCEICGSVFISLQLLKRHLHIHESGSFPCNKCDKVFTNSTKRSLHYKGVHLKQFPRRCPICPERFNSNYQRTKHLRIAHNQSTGLYRCDTCGREYDLKYHLLVHIRSVHLQERNHECPMCSSRFFSKYCLSRHMIIHTGEKNFKCEICGKAYARRKNLRDHCRSHEVGLCAICGLNCGDHNNLVAHVNNVH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01526319;
- 90% Identity
- -
- 80% Identity
- -