Basic Information

Transcription Factor Domain

TF Family: PC4
Domain: PC4 domain
PFAM: PF02229
TF Group: Unclassified Structure
Description: This domain is found at the C-terminal end of Activated RNA polymerase II transcriptional coactivator p15 from humans, YdbC from Lactococcus lactis, and other PC4 family members. p15 has a bipartite structure composed of an N-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain [1-4]. Activity is controlled by protein kinases that target the regulatory domain.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0053 1.7e+02 3.6 0.0 33 47 10 24 7 25 0.90

2 13 0.0018 60 5.0 0.0 33 47 32 46 30 47 0.90

3 13 0.0092 3e+02 2.8 0.0 33 47 65 79 63 80 0.87

4 13 0.22 7.1e+03 -1.6 0.0 36 46 90 100 81 101 0.74

5 13 0.0018 60 5.0 0.0 33 47 109 123 107 124 0.90

6 13 0.0055 1.8e+02 3.5 0.0 33 47 131 145 129 146 0.89

7 13 0.35 1.2e+04 -2.3 0.0 38 47 147 156 145 156 0.83

8 13 0.0018 60 5.0 0.0 33 47 164 178 162 179 0.90

9 13 0.0018 60 5.0 0.0 33 47 186 200 184 201 0.90

10 13 1 3.3e+04 -3.7 0.0 35 44 210 219 208 219 0.82

11 13 0.019 6.3e+02 1.8 0.1 33 45 257 269 255 271 0.88

12 13 0.0018 60 5.0 0.0 33 47 279 293 277 294 0.90

13 13 0.0092 3e+02 2.8 0.0 33 47 312 326 310 327 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0053	1.7e+02	3.6	0.0	33	47	10	24	7	25	0.90
2	13	0.0018	60	5.0	0.0	33	47	32	46	30	47	0.90
3	13	0.0092	3e+02	2.8	0.0	33	47	65	79	63	80	0.87
4	13	0.22	7.1e+03	-1.6	0.0	36	46	90	100	81	101	0.74
5	13	0.0018	60	5.0	0.0	33	47	109	123	107	124	0.90
6	13	0.0055	1.8e+02	3.5	0.0	33	47	131	145	129	146	0.89
7	13	0.35	1.2e+04	-2.3	0.0	38	47	147	156	145	156	0.83
8	13	0.0018	60	5.0	0.0	33	47	164	178	162	179	0.90
9	13	0.0018	60	5.0	0.0	33	47	186	200	184	201	0.90
10	13	1	3.3e+04	-3.7	0.0	35	44	210	219	208	219	0.82
11	13	0.019	6.3e+02	1.8	0.1	33	45	257	269	255	271	0.88
12	13	0.0018	60	5.0	0.0	33	47	279	293	277	294	0.90
13	13	0.0092	3e+02	2.8	0.0	33	47	312	326	310	327	0.87

Coding Sequence: ATGAAGCTCGGCGAGGCACTAACAGTTCTCCCGGGGAAGCTCGGTGTGGCCCTAACAGGTTCCCAGGTGAAGCTCGGCGTGGCACTAACAGTTCTCCCGGGGAAGCTCGGTGTGGCCCTAACAGTTTCCCAGGTGAAGCTCGGTGTGGCCCTAACAGTTTCCCACGTGAAGCTCGGCGTGGCACTAACAGTTCTCCCGGGGAAGCTCGGTGTGGCCCTAACAGTTTGCCAGGTGAAGCTCGGTGTGGCCCTAACAGGTTCCCAGGTGAAGCTTGGTGTGGCCCTAACAGTTTCCCAGGTGAAGCTCGGCGTGGCACTAACAGTTCTCCCGGGGAAGCTCGGTGTGGCCCTAACAGTTTCCCAGGTGAAGCTCGGCGTGGCACTAACAGTTCTCCCGGGGAAGCTCGGTGTGGCCCTAACAGGTTCCCAGGTGAAGCTTGGTGTGGCCCTAACAGTTTCCCAGGTGAAGCTCGGCGTGGCACTAACAGTTCTCCCGGGGAAGCTCGGTGTGGCCCTAACAGTTTCCCAGGTGAAGCTCGGCGTGGCACTAACAGTTCTCCCGGGGAAGCTCGGTGTGGCCCTAACAGTTTCCCAGGTGAAGCTCGGCGTGGCACTAACAGTTCTCGCGGGGAAGCTCGGTGTGGCCCTAACAGATGAAGCTCGGTGTGGCCCTAACAGTTTCCCACGTGAAGCTCGGCGTGGCACTAACAGTTCTCCCGGGGAAGCTCGGTGTGGCCCTAAGGTGAAGCTCGGCGTGGCACTAACAGTTCTCCCGGGGAAGCTCGGTGTGGCCCTAACAGGTTCCCAGGAGAAGCTCGGCGTGGCACTAACAGTTCTCCCGGGGAAGCTCGGTGTGGCCCTAACAGTTTCCCAGGTGAAGCTCGGTGTGGCCCTAACAGTTCCCCAGGTGAAGCTCGGCGTGGCACTAACAGTTCTCCCGGGGAAGCTCGGTGTGGCCCTAACAGTTTGCCAGGTGAAGCTCGGCGTGGCACTAACAGTTCCCCCGGTGAAGCTCGGTGTGGCACCAACAGTTCCCCCCCGGTGA
Protein Sequence: MKLGEALTVLPGKLGVALTGSQVKLGVALTVLPGKLGVALTVSQVKLGVALTVSHVKLGVALTVLPGKLGVALTVCQVKLGVALTGSQVKLGVALTVSQVKLGVALTVLPGKLGVALTVSQVKLGVALTVLPGKLGVALTGSQVKLGVALTVSQVKLGVALTVLPGKLGVALTVSQVKLGVALTVLPGKLGVALTVSQVKLGVALTVLAGKLGVALTDEARCGPNSFPREARRGTNSSPGEARCGPKVKLGVALTVLPGKLGVALTGSQEKLGVALTVLPGKLGVALTVSQVKLGVALTVPQVKLGVALTVLPGKLGVALTVCQVKLGVALTVPPVKLGVAPTVPPR*

Sequence clustering based on sequence similarity using MMseqs2