Basic Information

Gene Symbol
nfxl1
Assembly
GCA_949699075.1
Location
OX453023.1:21887456-21889927[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2 4.5e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 16 0.014 3.2e+02 2.7 0.7 4 10 169 175 168 175 0.97
3 16 3.1e-07 0.0069 17.7 15.9 3 19 186 202 185 202 0.95
4 16 1e-07 0.0023 19.2 12.8 3 19 239 255 237 255 0.92
5 16 1.7 3.8e+04 -3.9 1.9 6 10 280 284 279 284 0.83
6 16 4.7e-09 0.00011 23.5 11.7 1 19 290 308 290 308 0.99
7 16 9.2e-06 0.21 12.9 18.7 3 19 345 361 337 361 0.86
8 16 0.00053 12 7.3 18.9 1 18 395 412 395 413 0.97
9 16 4.5e-10 1e-05 26.7 14.0 1 19 422 440 422 440 0.99
10 16 0.0002 4.6 8.6 6.4 9 19 488 498 486 498 0.89
11 16 0.0043 97 4.4 6.9 1 12 508 518 508 518 0.90
12 16 0.35 7.7e+03 -1.7 3.6 14 18 547 551 547 552 0.87
13 16 0.43 9.6e+03 -2.0 0.2 8 11 568 571 567 572 0.80
14 16 9.1e-06 0.2 13.0 5.3 1 11 588 598 588 599 0.97
15 16 0.0036 81 4.7 16.8 4 18 630 645 628 646 0.85
16 16 1.3e-05 0.29 12.5 9.7 1 18 687 705 687 706 0.86

Sequence Information

Coding Sequence
ATGGCGCGCAGATATAGAGATGCTGCTGCTAAATTGCAGCTAAATGTTCAGAAACATTTGAAAGATATGAAGGAACTATCATCATCGGAAGACGAGGATCCGTGCGAGTCTAGTGTCCTGGATGGAGTGTTCCAGAGTTACTGGCGCGGCGGCGGAGACACTCATATGCTGAACAGGACAAAGAATCTCCTAGAAGAAGCTATTAGCGGCCGCGCTATAACGTGCCTAATCTGCATAGGATCAATCAAAAGAACTCACCCTATTTGGACCTGTGATCATTGCTATTCGTATTTCCACCTATCTTGTATACAGAAATGGTCGAATGACAGTATAAGCTTACGTAGCGAAGAAAGTCAGGGCCCAATAACTGTATTTAAACATCATAAAATTGAATGGTGCTGCCCTAAGTGCCGGACCTCATATTCTAAGGAAGAAATTCCTCGGAAATATCGCTGTTTCTGTGGCAAAACTGATGACCCACCATACCATCCCTGGCTTATACCTCACACTTGTGGAGAAGTTTGTGAAAAGCGACTGTCAACTGGTGATAACTGTAAACATAAATGCTTGCTCTTATGTCATCCTGGTCCATGCCCACCATGCCCACAAACTGTCAATGGGGTGTGTTTCTGTGAAAAGGAACGTAAGCGAGTACGATGCAGCGCTGCCAAATGGTCTTGTGGTCAAATTTGTAAGAACTCTCTTTTGTGTAAGACTCACAAATGTGAAAATATCTGCCATGAAGGTGACTGCCCCCAATGCAGCTACACTAGTATCCAGCCGTGCCAGTGTGGAACTGAGAAAGCTAAAAGACCATGCAATGACCCATTTTGGCAGTGCAAAAAGCCATGTAATCAATTATTTTCATGTGGTTATCATAAATGTGATAAAATCTGCCATTTGGGAGAGTGTGGGTCTTGCCCCAACTCTGGTACGAGATCTTGTCCCTGCGGTGCCAACCAGCGTTTTGTACAATGTCCAGATGTTATGGAAACCTGTTTAGGTACATGTGGCAAAAGACATGAAGATTGTGAACACAACTGTCCAGAAAAATGCCACAATGGAAACTGCCCACCTTGCCAAGTTTTAATACCAAAGAAATGCTACTGCTCAACACATACAAGGTCCCTACCATGTAGCAAGGAGTTCAAATGTGACACCAAATGCCGAGGGATACGACCATGTAGCAAACATGGGTGTGGACGAAAATGCTGTAATGGAAACTGTCCTCCATGTGAGAAAATATGTGATAAGCCCCTCCATTGTGGCAGGCATAAGTGCACAAATATTTGCCATCGTGGACCATGCTATCCATGCCCTTTAGAATCAAAAGTAACTTGCAGATGCAAAGAAACTTATGTAACTGTCCCATGTGGGAGAGAAAGGCAGACGAAACCACCAAAGTGCAGCTTGCCTtgcaaaattaaatacaaatgtGGTCACAGTGAAGAAAATAAGCACTCCTGCCATTTTGGTGACTGTCCACCATGCAAAGCCGTTTGTTACAAACAATATCCAAAGTGTAGTCACCAATGTAAAGCAGTCTGCCATGAATATGTTGCAGTGCTCTTCAAACAGGTTGAAAAGCCTGCTACTCCATGGGAAGTGCAACCACCAAAGACCAAGATAATGACCTTAGATTGTCCTCCATGTGACACACCAATTCCTATTGTTTGTTTTGGAGAACATGAGACAGACAATCAACCTTGTCACTTAGCTACACGGAGGCCTTGCGGAAGAGAGTGTGGCCGACCATTGGCTTGTGGAAATCACAAGTGCACATTACTTTGTCATCTTTACAACCCAGTTCCTGAGTATCCTAATGTGCCTGCCAGCTGTAAGCAATGTAATAGAGAATGTTCAGTTCCTCGTCCAGAAAAATGTGCTCATAAATGTCCCATTCGTGCCTGTCATCCAGGCCCGTGCCATCCATGTGAGATACTTGAACGAGTAGCCTGCCATTGTGGAGTAACAGAAATTTATTTGCGCTGCCGGGAATTATCTACAGCAACTGAGGAGACGTTGTCATGCAAGCAACAATGTCCTAAAAACTTGGATTGTAGCCACCGCTGCCGTAACATATGTCATTCAGGAGCTTGTGGCAACCAAGTATGTACTAAGAAAACCAAAGTTCACTGCCCTTGTGGTAACATAAAGAAGGACGCTCCTTGCAACTCTGTTAGAAATGGAGACATGAAAATATTATGTGATGAAACCTGTGAAGCTAAAAAGATTGCTGCTAAGCTAGAAAATGAGAAAGAAAAACAGAGATTGAAAGAATTGGAAGAAGAGAAGAATCGCAAGGAGTTGGCAGAGTATGAGTGGAAATTGAGTGGCAAGAAGAAGAAATATAAGGAAAAGAAAATGGCTATTGATAAGGATGATAGAGGATTTTTGAGGAAATATTGGGTACCAATATCATCATTTCTAGTGATGATGCTAGCtgctttttattatatattttatgtgtga
Protein Sequence
MARRYRDAAAKLQLNVQKHLKDMKELSSSEDEDPCESSVLDGVFQSYWRGGGDTHMLNRTKNLLEEAISGRAITCLICIGSIKRTHPIWTCDHCYSYFHLSCIQKWSNDSISLRSEESQGPITVFKHHKIEWCCPKCRTSYSKEEIPRKYRCFCGKTDDPPYHPWLIPHTCGEVCEKRLSTGDNCKHKCLLLCHPGPCPPCPQTVNGVCFCEKERKRVRCSAAKWSCGQICKNSLLCKTHKCENICHEGDCPQCSYTSIQPCQCGTEKAKRPCNDPFWQCKKPCNQLFSCGYHKCDKICHLGECGSCPNSGTRSCPCGANQRFVQCPDVMETCLGTCGKRHEDCEHNCPEKCHNGNCPPCQVLIPKKCYCSTHTRSLPCSKEFKCDTKCRGIRPCSKHGCGRKCCNGNCPPCEKICDKPLHCGRHKCTNICHRGPCYPCPLESKVTCRCKETYVTVPCGRERQTKPPKCSLPCKIKYKCGHSEENKHSCHFGDCPPCKAVCYKQYPKCSHQCKAVCHEYVAVLFKQVEKPATPWEVQPPKTKIMTLDCPPCDTPIPIVCFGEHETDNQPCHLATRRPCGRECGRPLACGNHKCTLLCHLYNPVPEYPNVPASCKQCNRECSVPRPEKCAHKCPIRACHPGPCHPCEILERVACHCGVTEIYLRCRELSTATEETLSCKQQCPKNLDCSHRCRNICHSGACGNQVCTKKTKVHCPCGNIKKDAPCNSVRNGDMKILCDETCEAKKIAAKLENEKEKQRLKELEEEKNRKELAEYEWKLSGKKKKYKEKKMAIDKDDRGFLRKYWVPISSFLVMMLAAFYYIFYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00932106;
90% Identity
iTF_00072400;
80% Identity
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