Basic Information

Insect: Asbolus verrucosus
Gene Symbol: L
Assembly: GCA_004193795.1
Location: QDEB01063584.1:16385-26508[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.016 0.81 10.0 0.7 1 23 77 99 77 99 0.98

2 16 0.097 4.9 7.5 4.8 1 23 105 127 105 127 0.97

3 16 9.9e-07 5e-05 23.2 3.2 1 23 133 155 133 155 0.99

4 16 0.00015 0.0075 16.4 0.3 1 23 161 183 161 183 0.99

5 16 1.3e-05 0.00068 19.7 0.8 1 23 205 228 205 228 0.97

6 16 0.011 0.56 10.5 0.2 2 23 255 277 254 277 0.93

7 16 0.045 2.3 8.6 0.3 1 23 311 334 311 334 0.95

8 16 0.0078 0.4 11.0 0.0 3 23 439 459 438 459 0.97

9 16 0.00096 0.048 13.9 2.5 3 23 469 490 467 490 0.90

10 16 0.054 2.7 8.4 0.8 1 23 495 518 495 518 0.94

11 16 0.00078 0.04 14.1 4.6 1 23 583 606 583 606 0.97

12 16 4.8e-05 0.0024 17.9 2.6 2 23 688 709 687 709 0.97

13 16 0.15 7.8 6.9 0.0 2 23 741 762 740 762 0.90

14 16 0.0028 0.14 12.4 0.3 2 23 771 792 770 792 0.95

15 16 0.0057 0.29 11.4 0.0 1 23 800 822 800 822 0.96

16 16 0.028 1.4 9.2 1.6 1 23 829 851 829 851 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.016	0.81	10.0	0.7	1	23	77	99	77	99	0.98
2	16	0.097	4.9	7.5	4.8	1	23	105	127	105	127	0.97
3	16	9.9e-07	5e-05	23.2	3.2	1	23	133	155	133	155	0.99
4	16	0.00015	0.0075	16.4	0.3	1	23	161	183	161	183	0.99
5	16	1.3e-05	0.00068	19.7	0.8	1	23	205	228	205	228	0.97
6	16	0.011	0.56	10.5	0.2	2	23	255	277	254	277	0.93
7	16	0.045	2.3	8.6	0.3	1	23	311	334	311	334	0.95
8	16	0.0078	0.4	11.0	0.0	3	23	439	459	438	459	0.97
9	16	0.00096	0.048	13.9	2.5	3	23	469	490	467	490	0.90
10	16	0.054	2.7	8.4	0.8	1	23	495	518	495	518	0.94
11	16	0.00078	0.04	14.1	4.6	1	23	583	606	583	606	0.97
12	16	4.8e-05	0.0024	17.9	2.6	2	23	688	709	687	709	0.97
13	16	0.15	7.8	6.9	0.0	2	23	741	762	740	762	0.90
14	16	0.0028	0.14	12.4	0.3	2	23	771	792	770	792	0.95
15	16	0.0057	0.29	11.4	0.0	1	23	800	822	800	822	0.96
16	16	0.028	1.4	9.2	1.6	1	23	829	851	829	851	0.97

Sequence Information

Coding Sequence: atgttgtttaaagGAAATAGCAGCCGGCTCGAACTGCTCATCGAAAAAATTCAGTCAAATAAGGAAAATGGGGAATTTAAAGTGCCAGTAGCCGAGGATGAAACGGCTGCCAGTTCCGCATCGGGCGGTTCTGCATCTGGTGAAACTGTACAAGGATTTGATGATCTCGTGCAAGGGTCCGAAGAACCAGTACAGGGAGATCAAGAACGAGATACTAAACCAGGCCCGTACAAATGCACGGTATGtggagaaaattatttaaaagaaaagcaGCTCAGGGAACACGAACAGAGCCATACCGAACATCTGCAGTTTACCTGTGCGTATTGCCCTCGACTTTTTAAGCACAAACGTTCGAGAGATCGTCACACTAAACTTCATACAGgagacaaaaaatataaatgccaACAATGCGATTCAGCATTCTCCCGAAGCGATCATCTTAAAATTCACATGAAAACGCACGACAGTCGTAAACCCTATAAATGTGGTACATGCAATAGGGGTTATAACACCGCCGCAGCTCTGTCATCCCATCAACAAAGTCACTTGAAGCAAGAGTCTAGATCCGGAAGCCGCACAAGTGGAGGAAGCACCCCTAGTCCGGGACTTTTCCGGTGTAATCATTGCACAGAAACTTTCGGGAAACCGGATCTTTTGCAGaatcacATGGCAATGGTCCATAGCGACACGGATTCGTCTTTGAGTCAGACACCTGAGCCTCTGTCTGAATACCAAAACCAAATCGAAGATCTGAAGATAGTTTGTATGTATTGTTCTAAAGAATTCTCAAGCTTAGATCTGATGTATCAACATACAAGTATTGCTCACCGCGACGTTTCGAACGGTGTTTCAACTTCAGTTTCCATCCCTTCACCAGTAATTCAAAACTCTCCTAAACAGGAGATTTGTCAAAACGGAACACCAACATTCGCCTGTGATAGATGCACAATGCAATTAGACTCCTTACAAAACCTTAAAAACCACATCAATAATGTACACTGGCGTCCAACATTATCACCAAACCCTATTAAAgattatggaaattttatgGCACTGGAAAAGAGTTATTCGCCGTTTCAAACGCAACCAACCGATTTGAGcaggaaaaagaagaaagaagacAGTCCAGAGAAGAacattaagaagaaaaaacaagatCATCAACACTCACCCAGTACATTAAGTCCATACGATTCAAATGACAAACCATGTATCTGTTCGTGCTGCTACGCACAGCTGCCAAATTTCAAGAGTTTTCTTCATCATATGGAGAGTCATATGGTGTCTTCTAACAATTCACTGCTAGGTTTCTGTCCAGTCTGTGGAGAACCTGGACGCGATCCTGTTTCTTTCACCAACCACATCTTCAGCCACGCCATTGCTCAAGTACCTGGACGTTGTTGTTACACTTGTAAAAAGTCGTTTGAAAGACTGGAAGAATTGCAGAAGCACTTGTTAGATGTTCATGTAGTCTCAGTCTTTAAGTGTTCCATTTGCAACGACATCTTCGACACTAAAATTTCGATGCAATTGCATCTAACGAACAAACACAGCGACGAATGTAAAcactttaaatgttatttgtgCACCAATCAAGTTTTCCACGACAGACTTTCCGCTGAGCTTCACATTTCCATGAAACACTACCAGCAGTTCACGCCTTGCGTTGGCACCAATCACTCGCTCTTAAGGTCGCAGTATCAGACAGAACTCGATGCCAGACTAAGAGAGTACAGTATGATTTTCCAGTGCACCTTCTGCCACAAGACTTTCAAAGACCAATACTCTCAATATATCCACATATTGAAGGAGCACAACGAAACGAAAGAGggtgaaaaatatattttggatTCAGCAATGAATCAGAATCCGTCCAGGTCCCCCAACTTTATGTTTCCGAAAATCCTGACCCCCGATCACGTAACCATGGATACCACGAGCATCGAAACGGTTTACACTTGTGATATTTGCAACCGTAGTGATATAGCGTCAGAAACCGATTTGATAAGTCACAAGAAGTTGCATCATAGTAAGAACAAAATTGGTCCAGTGAGCTTGCAGTGTGCATATTGCAACGAATATTGCAAGTCTAGAAGTGATTTAGAAAACCACATGAAGACCCATCAAGTCACCTGTGACTGTagtgcaaaaaataataatggaacaaacAGTTCCGACTGCGATGTGAAAAAAGTGTCAACACCAGGGAAGCAGTTCGCCTGCATTCAATGTCCACAAACATTCGAGAGTGAAAGTGATGTCCAGAGCCACGCAGCCATGCATATGTTAAACGAAGGAACAAACTTAGAATGTAGACTTTGTAAACAAGTCTTCTCATCTCCCTTGAAGCTGCAGACGCACCTAATCGAACATAACTTCTATGGGATGAATCAGTACAGTTGTTATGTGTGTTCTTCAGTGTTCACAGCAGCAAGTGGTTTGCAAAATCACATCATAGGGCACGGCTTAGACAGTAGACCTTATGAATGTTCTCAATgccaaatgaaatttttctttagagCAGAGCTTGATAATCACCGATTTGTTCACTTGCTTCAGGCGCCCACGAATGCCCAGAAACCTTATTCCATTCCCAATGGCGTTGAAATTAtgtacgaaaataaaacaagtcctcattataaaatttgtaaatattgttccAACTCCTATTTGGATAACTCATTTTTCTTAGAACATTTAAACCAGTGTCCCTTCAGAATAAGTCCGAAACGTGAAACTTTTGATACAACCGCAAACGATGTagacaataatattaaacaagaAGTAACAGAAATCACGTCAGAGGTCGTTATTGAAAAAGATgagcaataa
Protein Sequence: MLFKGNSSRLELLIEKIQSNKENGEFKVPVAEDETAASSASGGSASGETVQGFDDLVQGSEEPVQGDQERDTKPGPYKCTVCGENYLKEKQLREHEQSHTEHLQFTCAYCPRLFKHKRSRDRHTKLHTGDKKYKCQQCDSAFSRSDHLKIHMKTHDSRKPYKCGTCNRGYNTAAALSSHQQSHLKQESRSGSRTSGGSTPSPGLFRCNHCTETFGKPDLLQNHMAMVHSDTDSSLSQTPEPLSEYQNQIEDLKIVCMYCSKEFSSLDLMYQHTSIAHRDVSNGVSTSVSIPSPVIQNSPKQEICQNGTPTFACDRCTMQLDSLQNLKNHINNVHWRPTLSPNPIKDYGNFMALEKSYSPFQTQPTDLSRKKKKEDSPEKNIKKKKQDHQHSPSTLSPYDSNDKPCICSCCYAQLPNFKSFLHHMESHMVSSNNSLLGFCPVCGEPGRDPVSFTNHIFSHAIAQVPGRCCYTCKKSFERLEELQKHLLDVHVVSVFKCSICNDIFDTKISMQLHLTNKHSDECKHFKCYLCTNQVFHDRLSAELHISMKHYQQFTPCVGTNHSLLRSQYQTELDARLREYSMIFQCTFCHKTFKDQYSQYIHILKEHNETKEGEKYILDSAMNQNPSRSPNFMFPKILTPDHVTMDTTSIETVYTCDICNRSDIASETDLISHKKLHHSKNKIGPVSLQCAYCNEYCKSRSDLENHMKTHQVTCDCSAKNNNGTNSSDCDVKKVSTPGKQFACIQCPQTFESESDVQSHAAMHMLNEGTNLECRLCKQVFSSPLKLQTHLIEHNFYGMNQYSCYVCSSVFTAASGLQNHIIGHGLDSRPYECSQCQMKFFFRAELDNHRFVHLLQAPTNAQKPYSIPNGVEIMYENKTSPHYKICKYCSNSYLDNSFFLEHLNQCPFRISPKRETFDTTANDVDNNIKQEVTEITSEVVIEKDEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01568303;
90% Identity: -
80% Identity: -