Basic Information

Insect: Aromia moschata
Gene Symbol: -
Assembly: GCA_029963805.1
Location: JAPWTK010000641.1:183017-186984[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 9.8e-06 0.00075 20.6 0.2 2 23 180 202 179 202 0.95

2 11 0.037 2.9 9.3 3.8 1 19 235 253 235 258 0.91

3 11 0.00043 0.033 15.4 0.5 2 20 275 293 274 295 0.95

4 11 1.2e-05 0.00094 20.3 1.2 1 23 306 328 306 328 0.97

5 11 0.00075 0.058 14.7 0.7 1 23 338 360 338 360 0.98

6 11 6.7e-06 0.00052 21.1 0.3 1 23 366 388 366 388 0.98

7 11 2e-06 0.00015 22.8 1.5 1 23 394 416 394 416 0.99

8 11 7.1e-06 0.00054 21.0 3.6 1 23 422 444 422 444 0.96

9 11 2.1e-05 0.0016 19.5 2.7 1 23 450 473 450 473 0.97

10 11 0.0037 0.29 12.5 2.1 2 20 480 498 479 501 0.92

11 11 0.00029 0.022 16.0 5.5 3 23 515 536 507 536 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	9.8e-06	0.00075	20.6	0.2	2	23	180	202	179	202	0.95
2	11	0.037	2.9	9.3	3.8	1	19	235	253	235	258	0.91
3	11	0.00043	0.033	15.4	0.5	2	20	275	293	274	295	0.95
4	11	1.2e-05	0.00094	20.3	1.2	1	23	306	328	306	328	0.97
5	11	0.00075	0.058	14.7	0.7	1	23	338	360	338	360	0.98
6	11	6.7e-06	0.00052	21.1	0.3	1	23	366	388	366	388	0.98
7	11	2e-06	0.00015	22.8	1.5	1	23	394	416	394	416	0.99
8	11	7.1e-06	0.00054	21.0	3.6	1	23	422	444	422	444	0.96
9	11	2.1e-05	0.0016	19.5	2.7	1	23	450	473	450	473	0.97
10	11	0.0037	0.29	12.5	2.1	2	20	480	498	479	501	0.92
11	11	0.00029	0.022	16.0	5.5	3	23	515	536	507	536	0.94

Sequence Information

Coding Sequence: ATGGATAACTCCGTGATGGTAATACCCGTTAAAACGGAGGCAACTGACGTGAAATCGGAGGCCCTCGAGACCGCGGAGCATGTCGAAACGGTGGGGAATGCCGAAGTACACACGGTCATCCTGCAGAATATACAGTTACATGACGGAGAGGAGCTTCCTGTGATCCTGAACGATTTCTCTCAGAACAACTCGGATGGAAACCTGGAAATTGCCATGGAAGACGACGTCATCCACACCTACATAATAGATAATAGGGAATACGAACCCCACGGCGGAGAGGAGATTATATACGAGGAGCAAGACGGAGAAGAGAGCACGGTCCACTATGTTATCGAGGAGCACACGGAATTCGTGGATGGCAACGAGTCTGTCGTGGAGAGCAACGAGTACAACGACAACTCTATGGAGTACACATTCATGGAAAACGAGGAGTACTTAGACGACCCGTCCGAAGAACAGCTGCCGGCTGAAGAAGTCCAGGAGGCCATAGAAGCGGCCAACATCAAGAAGGAGGACGAGGCGATGGATCAGATGCTGGAATGTGACATTTGCAACAAGGCTTTTAAAACTACCGCGGGTCTCAAGAGGCATATCACGGTCAATCACGGCGACAAAGACAACACGGAGGAGGAGGACCCTCTTACGTTCCAGTTATGCCCCTGTTGCGGAGAACCGTCCGATTCGGCTCATACCATAGGCGACTTCAAGTGTGAACAGTGTGACAAGCTGTTCGTGCAGCAGAACTGCCTCGATCGCCACTGCAGCATCGAACACCCCGAGCAGATCATCGATCACATGCGAATACACCCGCTCAAGTCCGTAAAGTGCCTGGGCTGCAGCAGGGAATTCTCCAGGAAGTACCACCTGGACAGACACATCGGCCAGACCGGTTGCATGGGGCTTCCTAGGAAGGCGTTCGATTGCAGAGTGTGCAAGCGGTTCTTCACCCGGAAGGACAACCTCGCCGAGCATCTCAGGGGACACGCGGGCCAGGCCAAGAAGAAGAAGACCTTCAACTGCGAGTTCTGCGGCAAACAGTTCCAAGGCTATGCGCTGCTCAGCATTCACACCCGCACCCATACAGGGGAGAGGCCGTACCCCTGCGACCTGTGTCCCAAGAAGTTCCCCTCGAGCGCGGCGATGAAGAAACACCGTCGGATGCACACCGGAGAAAAGCCGTACAAATGCGAAAAGTGCGCCAAGAAGTTCGCCGCGAAGGAGACCCTGAACCGCCACATGCGCACCCACACGGGGGAGAAACCCCACCAGTGCCAGTTCTGCGGCAAGTCCTTCATCCAGGCGTCGCAGCTGCGGGCCCACATCTTCCATCACACCGGCGAGAACGCCTTCACTTGCCCGCACTGCGGTCGCGCGTTCAACAGGAAACTCAGGCTGACCACCCACATCAAGTACATGCACGAGGGGGCCGAGCCGCTGCCGTGCCCCCACTGCGAGAAGACCTTCTTCAGGAAGGAGGACGTCGCGCGGCACGCGCTCTGCCACAGCGGCGAGAGACCGTTTGTGTGCGAGGTCTGCCAGAACTGCGACACGTGCGGGCGCGCCTTCATCCGCCAGGACTGCCTGATGCGGCACATCCGCGCCAGGCACCGCGACGTGCTCGAGGACATCATGGCGAGCGCGGAGAAGAAGCGCCTGCAGCAGCAGCTGCTCAGCGCCGCCACGGACGCGGCGTCGCGCGGCGGCCTCGCCGAGAACGTCGTCTGGAACGAGCTGACGCTCACCGAGTCCATCAAGGAGCTGCTCACGCTGCTCGTCGACGAGGAGTGCCTCGCCGAGTTCGGGTATCCGGACGCGCCCGTCGACAAGGTGCTCAACTCGGTGATCAAGCGGTGCGGCCACAAACCCGCGTCCGAGGAGGACTTTGACTACATCGGCAGGATGCGGGAGAACGCCAAGCTGCTGTTCACCGTGGTGATCGACGACGAGGCCGTCAAGGAGCTGCTGAACAACCAGACGGTCGACGAGGTCATCCTGCACGTGCTGCGCCTGGCCAAGAAACAGAACCCGAGCTAA
Protein Sequence: MDNSVMVIPVKTEATDVKSEALETAEHVETVGNAEVHTVILQNIQLHDGEELPVILNDFSQNNSDGNLEIAMEDDVIHTYIIDNREYEPHGGEEIIYEEQDGEESTVHYVIEEHTEFVDGNESVVESNEYNDNSMEYTFMENEEYLDDPSEEQLPAEEVQEAIEAANIKKEDEAMDQMLECDICNKAFKTTAGLKRHITVNHGDKDNTEEEDPLTFQLCPCCGEPSDSAHTIGDFKCEQCDKLFVQQNCLDRHCSIEHPEQIIDHMRIHPLKSVKCLGCSREFSRKYHLDRHIGQTGCMGLPRKAFDCRVCKRFFTRKDNLAEHLRGHAGQAKKKKTFNCEFCGKQFQGYALLSIHTRTHTGERPYPCDLCPKKFPSSAAMKKHRRMHTGEKPYKCEKCAKKFAAKETLNRHMRTHTGEKPHQCQFCGKSFIQASQLRAHIFHHTGENAFTCPHCGRAFNRKLRLTTHIKYMHEGAEPLPCPHCEKTFFRKEDVARHALCHSGERPFVCEVCQNCDTCGRAFIRQDCLMRHIRARHRDVLEDIMASAEKKRLQQQLLSAATDAASRGGLAENVVWNELTLTESIKELLTLLVDEECLAEFGYPDAPVDKVLNSVIKRCGHKPASEEDFDYIGRMRENAKLLFTVVIDDEAVKELLNNQTVDEVILHVLRLAKKQNPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00166250;
90% Identity: iTF_00166250;
80% Identity: iTF_00166250;