Acus000358.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073759.1:5578714-5580165[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.019 45 6.3 0.2 21 48 11 38 7 40 0.92 2 16 2.9e-05 0.069 15.3 0.7 18 48 37 67 35 72 0.92 3 16 3.4 8.1e+03 -0.9 0.1 22 45 70 93 68 98 0.79 4 16 0.015 35 6.6 0.5 20 48 97 125 93 129 0.91 5 16 0.013 30 6.9 0.3 18 49 124 155 122 161 0.88 6 16 1 2.4e+03 0.7 0.2 23 48 158 183 152 187 0.81 7 16 0.055 1.3e+02 4.8 0.5 21 49 185 213 180 219 0.85 8 16 1.2 2.8e+03 0.5 0.3 23 48 216 241 209 243 0.80 9 16 0.021 49 6.2 0.5 21 49 243 271 238 275 0.89 10 16 0.059 1.4e+02 4.7 0.6 18 48 269 299 267 305 0.85 11 16 0.68 1.6e+03 1.3 0.9 21 48 301 328 297 333 0.71 12 16 0.66 1.6e+03 1.3 0.6 17 30 326 339 312 358 0.81 13 16 0.045 1.1e+02 5.1 0.2 21 48 359 386 346 388 0.90 14 16 0.00013 0.31 13.2 0.4 18 48 385 415 383 419 0.92 15 16 0.26 6.2e+02 2.6 0.1 22 48 418 444 416 447 0.88 16 16 0.00011 0.27 13.4 0.5 18 49 443 474 441 477 0.91
Sequence Information
- Coding Sequence
- ATGAAAATACATGTAATGGCCTGTCATaaaggtgagaagcctcatcactgtcctcactgtgattataaatcagcacaatctggacacatgaaaaatcatgtaatggcccgtcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcacaatcTGGAAATATAAAAAGGCATATAATAGTCCGTCATAAAGGGGAGAAAcgtcatcaatgtcctcactgtgattataaatcagcacaatcTGGACACATGAAAAATCATGTAATGGCCTGTCATAAAaatgagaagcctcatcactgtcctcactgtgattataaatcagcacaatctggacacataaaaaatcatataatggctcgtcatacaggtgagaagcctcatcaatgtcctcactgtgattatacaTCAGCAGAATCTGGAACAatgaaaaaacatgtaataGCCCGTCATACAGTCataaagcctcatcaatgtcctcactgcgATTATAAATCAGCCATATCTGGTTCTATGAAAAGACATGTAATGACCcatcatacaggtgagaagcctcatcaatgtccccattgtgattataaatcagcaagaTCTGGAACAatgaaaaaacatgtaataGCCCGTCATACAGTCataaagcctcatcaatgtcctcactgcgATTATAAATCAGCCATATCTGGTTCTATGAAAAGACATGTAATGACCcatcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcaatatCTGAAACTATGAAAAGACAtgtaatggctcgtcatacggatgagaagcctcatcaatgtcctcactgtgattataaatcatcaCAATCtgcaactatgaaaacacatgTTATGGCCTGTCATACAgatgagaagcctcatcaatgtccttactgtgattataaatcagcacgaTATGGACACATGAAAAATcatgtaatggcccgtcatacaggtgagaagcctcatcaatgtcctcagtgtgattataaatcagccaTATCTGGAACCATGAAAATACATGTAATGGCctgtcatacaggtgagaagcctcatcactgtcctcactgtgattataaatcagcacaatctggagctatgaaaatacatgttatggcccgtcatacaggtgagaagcctcatcaatgtcctcactgtgattatacaTCAGCAGAATCTGGAAATATAAAAAGGCATATAATAGTCCGTCATAAAGGGGAGAAAcgtcatcaatgtcctcactgtgattataaatcagcacaatctggacacatgaaaaatcatataatggctcgtcatacaggtgagaagcctcatcaatgtcctcactgtgattatacaTCAGCAGAATCTGGAAATATAAAAAGGCATATAATAGTCCGTCATACAGGGGAGAAACGTCATCAATGCCCTCTCTAA
- Protein Sequence
- MKIHVMACHKGEKPHHCPHCDYKSAQSGHMKNHVMARHTGEKPHQCPHCDYKSAQSGNIKRHIIVRHKGEKRHQCPHCDYKSAQSGHMKNHVMACHKNEKPHHCPHCDYKSAQSGHIKNHIMARHTGEKPHQCPHCDYTSAESGTMKKHVIARHTVIKPHQCPHCDYKSAISGSMKRHVMTHHTGEKPHQCPHCDYKSARSGTMKKHVIARHTVIKPHQCPHCDYKSAISGSMKRHVMTHHTGEKPHQCPHCDYKSAISETMKRHVMARHTDEKPHQCPHCDYKSSQSATMKTHVMACHTDEKPHQCPYCDYKSARYGHMKNHVMARHTGEKPHQCPQCDYKSAISGTMKIHVMACHTGEKPHHCPHCDYKSAQSGAMKIHVMARHTGEKPHQCPHCDYTSAESGNIKRHIIVRHKGEKRHQCPHCDYKSAQSGHMKNHIMARHTGEKPHQCPHCDYTSAESGNIKRHIIVRHTGEKRHQCPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00165446;
- 90% Identity
- iTF_00165446;
- 80% Identity
- iTF_00165446;