Acus000272.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073759.1:4852376-4853536[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.022 53 6.1 0.1 21 48 11 38 7 41 0.89 2 13 0.0042 10 8.4 0.5 18 48 37 67 36 69 0.91 3 13 0.0026 6.3 9.0 0.5 18 49 66 97 64 101 0.89 4 13 0.009 22 7.3 0.2 18 49 95 126 93 130 0.89 5 13 0.089 2.1e+02 4.1 0.3 18 48 124 154 122 156 0.86 6 13 0.0039 9.4 8.5 1.1 18 48 153 183 149 186 0.90 7 13 0.2 4.8e+02 3.0 0.2 21 48 185 212 182 217 0.81 8 13 0.068 1.6e+02 4.5 0.2 20 49 213 242 209 246 0.87 9 13 0.16 3.8e+02 3.4 0.1 17 32 239 254 224 271 0.72 10 13 0.24 5.9e+02 2.7 0.0 20 44 271 295 260 300 0.85 11 13 0.23 5.6e+02 2.8 0.1 21 45 301 325 296 329 0.79 12 13 0.27 6.4e+02 2.6 0.0 20 44 329 353 325 359 0.79 13 13 0.0034 8.3 8.7 0.1 21 45 359 383 355 385 0.92
Sequence Information
- Coding Sequence
- ATGAAAAGGCATATAATGGTCTGCCATAAAggggagaagcctcatcaatgccctcactgtgattataaatcagcaagaTCTGGAGATATGAAAAAACAtgtaatggctcgtcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcaacaTTTAGAGATATGAAAAGACATGttatggcccgtcatacaggcgagaagcctcatcaatgtcctcactgtgattataaatcagcaacaTTTAGAGATATGAAAAGGCATGTTgtggcccgtcatacaggtgagaagcctcatcaatgtcctcactgtgattttAAATCAGCAAGATCTGGAGATATGAAAAAACAtgtaatggctcgtcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcagaaTCTGGAAGAATGAAAGGGCatataatggcccgtcatacaggtgagaagcctcatcaatgtcctcactgtgattatataTCAGCAGAATCTGAAAGAATGAAAAGGCATATAATGGTCTGCCATAAAggggagaagcctcatcaatgtcctcactgtgattataaatcagcaagaTCTGGAGATATGAAAAAACATGTAATGGCCAGTCATaaaggtgagaagcctcatcaatgccctcactgtgattataaatcagcagaaTCTGGAACTATGAAAAACCATGTAATGGCTCgccatacaggtgagaagcctcatcagtgtcctcactgtgattataaatcagcaagaTCTGGAACTATGAAAATTCATGTAATGGCCCTTCATAAAGGGGagaaacctcatcaatgtcctcactgtgattttAAATCAGCAAGATCTGGAGATATGAAAAAGCATATAATGGTCCATCaaacaggtgagaagcctcatcaatgtcctcattgtgattataaatcagcaagaTCTGGAGATATGAAAAAACATGTAATGGCCAGTCATaaaggtgagaagcctcatctatgtcctcactgtgattataaatcagcaagaTCTGGAGATATGAAAAAACATGTAATGGCCcttcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcagaatctggaaatatgaaaagacATATAGAACATTGTTGTTAG
- Protein Sequence
- MKRHIMVCHKGEKPHQCPHCDYKSARSGDMKKHVMARHTGEKPHQCPHCDYKSATFRDMKRHVMARHTGEKPHQCPHCDYKSATFRDMKRHVVARHTGEKPHQCPHCDFKSARSGDMKKHVMARHTGEKPHQCPHCDYKSAESGRMKGHIMARHTGEKPHQCPHCDYISAESERMKRHIMVCHKGEKPHQCPHCDYKSARSGDMKKHVMASHKGEKPHQCPHCDYKSAESGTMKNHVMARHTGEKPHQCPHCDYKSARSGTMKIHVMALHKGEKPHQCPHCDFKSARSGDMKKHIMVHQTGEKPHQCPHCDYKSARSGDMKKHVMASHKGEKPHLCPHCDYKSARSGDMKKHVMALHTGEKPHQCPHCDYKSAESGNMKRHIEHCC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00165581;
- 90% Identity
- iTF_00165475;
- 80% Identity
- iTF_00165475;