Acus042660.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073762.1:3489167-3490801[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5e-05 0.12 14.5 0.7 17 48 81 112 75 115 0.92 2 10 0.001 2.4 10.4 1.0 18 49 111 142 111 147 0.87 3 10 0.051 1.2e+02 4.9 0.6 17 48 139 170 138 172 0.79 4 10 0.023 56 6.0 1.2 17 48 168 199 165 201 0.87 5 10 0.0032 7.7 8.8 0.5 17 48 197 228 194 230 0.88 6 10 0.0031 7.4 8.8 0.5 21 48 230 257 226 259 0.90 7 10 0.00099 2.4 10.4 1.2 17 49 255 287 252 292 0.86 8 10 0.076 1.8e+02 4.4 0.3 22 48 289 315 287 317 0.87 9 10 0.0098 24 7.2 0.9 17 45 313 341 310 346 0.88 10 10 0.0049 12 8.2 1.6 21 49 346 374 341 380 0.80
Sequence Information
- Coding Sequence
- ATGCCCTGGGAGCCTGGCCAGGCTAGTTTGTCAGCTTCCTCATTGCCCAGACTATCTGAATGCCCAAGTTCCCAATCAGTTTACTTGAATGCTCAAGTACCCAATCAATGCTTAAACTATTACGCTAAGCAAGCTTATTacccTCAAGGCTTACTCAACGAGGCAGGCGAGAAGcttcatcaatgtcctcattgtgaacTTAGATCAGTTCGAACTAAAGACATAAAACAACATATAATGTCTCGACATactggtgagaagcctcatcaatgtccttattgtgaatataaatcAGTTCAAACTCgttacttaaaacagcatatAATGTTTCGTCATAatggtgagaagcctcatcaatgtccttattgtgaatataaaacaattcGAAATAGTGACTTAAAACTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaatcaGTTAAAGCTAGTCACTTAAAACTCCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaatctATTCAAACTTGTTACTTAAAACTGCATATAATGTCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaaacaattcaaaataaagagTTAAAAGTGCATATAAAGGCTCAtcatactggtgagaagcctcatcaatgtcctcattgtgattataaaacaaTTCGAAATAGTGACTTAAAAGTACATATAAAGGCtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatttaaaacaattcgAAATAGTGACTTAAAACTACATATAAAGATtcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaatcaGTTCAAGCTAGTCACTTAAAATTCCATATAATGTCCcgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaatcaGTTCAAACTCGTTACTTAAAACTGCATATAATGTCTTgtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaaataattcgaAATAGGGACTTACAACTGCATATTAAGGCTCAtcatactggtgagaagccTTATCAATGTTATCATTGCAATTATAAAGCAATCGGTCTTAGAGTTTTAAAATCACATATAATCACTCATCATTCAAGTGAGAAGCCTCATTAA
- Protein Sequence
- MPWEPGQASLSASSLPRLSECPSSQSVYLNAQVPNQCLNYYAKQAYYPQGLLNEAGEKLHQCPHCELRSVRTKDIKQHIMSRHTGEKPHQCPYCEYKSVQTRYLKQHIMFRHNGEKPHQCPYCEYKTIRNSDLKLHIKARHTGEKPHQCPHCEYKSVKASHLKLHIMSRHTGEKPHQCPHCEYKSIQTCYLKLHIMSRHTGEKPHQCPHCEYKTIQNKELKVHIKAHHTGEKPHQCPHCDYKTIRNSDLKVHIKARHTGEKPHQCPHCEFKTIRNSDLKLHIKIRHTGEKPHQCPHCEYKSVQASHLKFHIMSRHTGEKPHQCPHCEYKSVQTRYLKLHIMSCHTGEKPHQCPHCEYKIIRNRDLQLHIKAHHTGEKPYQCYHCNYKAIGLRVLKSHIITHHSSEKPH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00165488;
- 90% Identity
- iTF_00165488;
- 80% Identity
- iTF_00165488;