Acus000334.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073759.1:5393503-5394867[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2e-05 0.049 15.8 0.5 17 48 7 38 3 43 0.92 2 15 1.6 3.9e+03 0.1 0.2 20 45 39 64 37 69 0.80 3 15 0.01 24 7.2 0.4 20 49 68 97 64 101 0.90 4 15 0.0047 11 8.2 0.5 18 48 95 125 93 128 0.89 5 15 0.028 68 5.7 0.2 18 49 124 155 122 159 0.89 6 15 0.0089 21 7.3 0.3 17 49 152 184 143 189 0.82 7 15 0.73 1.8e+03 1.2 0.1 21 48 185 212 173 214 0.79 8 15 0.018 45 6.3 0.4 21 49 214 242 209 246 0.89 9 15 0.054 1.3e+02 4.8 0.5 18 48 240 270 238 275 0.85 10 15 0.6 1.4e+03 1.5 0.8 21 48 272 299 268 304 0.71 11 15 0.68 1.6e+03 1.3 0.5 17 30 297 310 284 324 0.83 12 15 0.044 1.1e+02 5.1 0.2 21 48 330 357 318 359 0.91 13 15 0.00012 0.3 13.3 0.5 18 48 356 386 354 390 0.92 14 15 0.1 2.5e+02 3.9 0.4 19 49 386 416 385 420 0.87 15 15 0.0001 0.24 13.6 0.7 17 49 413 445 409 448 0.91
Sequence Information
- Coding Sequence
- atgaaaaatcatgtaatggcccgtcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcacaatcTGGAAATATAAAAAGGCATATAATAGTCCGTCATAAAGGGGAGAAAcgtcatcaatgtcctcactgtgattataaatcagcacaatcTGGACACATGAAAAATCATGTAATGGCCTGTCATaaaggtgagaagcctcatcactgtcctcactgtgattataaatcagcacaatctggacacatgaaaaatcatataatggctcgtcatacaggtgagaagcctcatcaatgtcctcactgtgattatacaTCAGTAGAATCTGGAAAGATTAAAAGACATATAATAGCCCGTCATAAAGGGGAGAAAcgtcatcaatgtcctcactgtgattataaatcagcacaatcTGGAACTATGAAAAAACATGTTATGGCCCggcatacaggtgagaagcctcatcaatgtccccattgtgattataaatcagcaagaTCTGGAACAatgaaaaaacatgtaataGCCCGTCATACAGTCataaagcctcatcaatgtcctcactgcgATTATAAATCAGCCATATCTGGTTCTATGAAAAGACATGTAATGACCcatcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcaatatCTGAAACTATGAAAAGACAtgtaatggctcgtcatacggatgagaagcctcatcaatgtcctcactgtgattataaatcatcaCAATCtgcaactatgaaaacacatgTTATGGCCTGTCATACAgatgagaagcctcatcaatgtccttactgtgattataaatcagcacgaTATGGACACATGAAAAATcatgtaatggcccgtcatacaggtgagaagcctcatcaatgtcctcagtgtgattataaatcagccaTATCTGGAACCATGAAAATACATGTAATGGCctgtcatacaggtgagaagcctcatcactgtcctcactgtgattataaatcagcacaatctggagctatgaaaatacatgttatggcccgtcatacaggtgagaagcctcatcaatgtcctcactgtgattatacaTCAGCAGAATCTGGAAATATAAAAAGGCATATAATAGTCCGTCATAAAGGGGAGAAAcgtcatcaatgtcctcactgtgattataaatcagcacaatctggacacatgaaaaatcatataatggctcgtcatacaggtgagaagcctcatcaatgtcctcactgtgattatacaTCAGCAGAATCTGGAAATATAAAAAGGCATATAATAGTCCGTCATACAGGGGAGAAACGTCATCAATGCCCTCTCTAA
- Protein Sequence
- MKNHVMARHTGEKPHQCPHCDYKSAQSGNIKRHIIVRHKGEKRHQCPHCDYKSAQSGHMKNHVMACHKGEKPHHCPHCDYKSAQSGHMKNHIMARHTGEKPHQCPHCDYTSVESGKIKRHIIARHKGEKRHQCPHCDYKSAQSGTMKKHVMARHTGEKPHQCPHCDYKSARSGTMKKHVIARHTVIKPHQCPHCDYKSAISGSMKRHVMTHHTGEKPHQCPHCDYKSAISETMKRHVMARHTDEKPHQCPHCDYKSSQSATMKTHVMACHTDEKPHQCPYCDYKSARYGHMKNHVMARHTGEKPHQCPQCDYKSAISGTMKIHVMACHTGEKPHHCPHCDYKSAQSGAMKIHVMARHTGEKPHQCPHCDYTSAESGNIKRHIIVRHKGEKRHQCPHCDYKSAQSGHMKNHIMARHTGEKPHQCPHCDYTSAESGNIKRHIIVRHTGEKRHQCPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00165446;
- 90% Identity
- iTF_00165446;
- 80% Identity
- iTF_00165441;