Acus000367.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073759.1:5655833-5657278[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.016 39 6.5 0.2 21 48 11 38 7 41 0.91 2 16 2.9e-05 0.071 15.3 0.7 18 48 37 67 35 72 0.92 3 16 1.8 4.2e+03 -0.0 0.2 20 45 68 93 66 98 0.80 4 16 0.02 49 6.2 0.6 20 48 97 125 94 127 0.92 5 16 0.00014 0.35 13.1 0.6 18 48 124 154 122 159 0.92 6 16 0.064 1.5e+02 4.6 0.2 19 48 154 183 153 187 0.88 7 16 0.0081 20 7.5 0.4 17 49 181 213 168 219 0.81 8 16 0.79 1.9e+03 1.1 0.1 21 48 214 241 202 243 0.79 9 16 0.02 48 6.2 0.4 21 49 243 271 238 275 0.89 10 16 0.066 1.6e+02 4.5 0.4 18 45 269 296 267 301 0.85 11 16 0.035 85 5.4 0.4 21 49 301 329 296 335 0.89 12 16 0.89 2.2e+03 0.9 0.4 18 30 327 339 324 358 0.82 13 16 0.046 1.1e+02 5.1 0.1 21 48 359 386 347 388 0.91 14 16 0.00013 0.31 13.2 0.4 18 48 385 415 383 419 0.92 15 16 0.18 4.3e+02 3.2 0.1 22 49 418 445 416 447 0.88 16 16 0.00028 0.67 12.2 0.7 18 48 443 473 442 477 0.91
Sequence Information
- Coding Sequence
- ATGAAAATACATGTAATGGCCTGTCATaaaggtgagaagcctcatcactgtcctcactgtgattataaatcagcacaatctggacacatgaaaaatcatgtaatggcccgtcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcacaatcTGGAAATATAAAAAGGCATATAATAGTCCGTCATAAAGGGGAGAAAcgtcatcaatgtcctcactgtgattataaatcagcacaatcTGGACACATGAAAAATCATGTAATGGCCTGTCATAAAaatgagaagcctcatcactgtcctcactgtgattataaatcagcacaatctggacacataaaaaatcatataatggctcgtcatacaggtgagaagcctcatcaatgtcctcactgtgattatacaTCAGCAGAATCTGGAAATATAAAAAGGCATATAATAGTCCGTCATAAAGGGGAGAAAcgtcatcaatgtcctcactgtgattataaatcagcacaatcTGGAACTATGAAAAAACATGTTATGGCCCggcatacaggtgagaagcctcatcaatgtccccattgtgattataaatcagcaagaTCTGGAACAatgaaaaaacatgtaataGCCCGTCATACAGTCataaagcctcatcaatgtcctcactgcgATTATAAATCAGCCATATCTGGTTCTATGAAAAGACATGTAATGACCcatcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcaatatCTGAAACTATGAAAAGACAtgtaatggctcgtcatacggatgagaagcctcatcaatgtcctcactgtgattataaatcatcaCAATCtgcaactatgaaaacacatgTTATGGCctgtcatacaggtgagaagcctcatcactgtcctcactgtgattataaatcagcacaatctggagctatgaaaatacatgttatggcccgtcatacaggtgagaagcctcatcaatgtcctcagtgtgattataaatcagccaTATCTGGAACCATGAAAATACATGTAATGGCctgtcatacaggtgagaagcctcatcactgtcctcactgtgattataaatcagcacaatctggagctatgaaaatacatgttatggcccgtcatacaggtgagaagcctcatcaatgtcctcactgtgattatacaTCAGCAGAATCTGGAAATATAAAAAGGCATATAATAGTCCGTCATAAAGGGGAGAAAcgtcatcaatgtcctcactgtgattataaatcagcacaatctggacacatgaaaaatcatataatggctcgtcatataggtgagaagcctcatcaatgtcctcactgtgattatacaTCAGCAGAATCTGGAAATATAAAAAGGCATATAATAGTCCGTCATAAAGGGGAGAAACGTCATCAATGCTAG
- Protein Sequence
- MKIHVMACHKGEKPHHCPHCDYKSAQSGHMKNHVMARHTGEKPHQCPHCDYKSAQSGNIKRHIIVRHKGEKRHQCPHCDYKSAQSGHMKNHVMACHKNEKPHHCPHCDYKSAQSGHIKNHIMARHTGEKPHQCPHCDYTSAESGNIKRHIIVRHKGEKRHQCPHCDYKSAQSGTMKKHVMARHTGEKPHQCPHCDYKSARSGTMKKHVIARHTVIKPHQCPHCDYKSAISGSMKRHVMTHHTGEKPHQCPHCDYKSAISETMKRHVMARHTDEKPHQCPHCDYKSSQSATMKTHVMACHTGEKPHHCPHCDYKSAQSGAMKIHVMARHTGEKPHQCPQCDYKSAISGTMKIHVMACHTGEKPHHCPHCDYKSAQSGAMKIHVMARHTGEKPHQCPHCDYTSAESGNIKRHIIVRHKGEKRHQCPHCDYKSAQSGHMKNHIMARHIGEKPHQCPHCDYTSAESGNIKRHIIVRHKGEKRHQC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00165446;
- 90% Identity
- iTF_00165446;
- 80% Identity
- iTF_00165435;