Acus068352.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073764.1:122940478-122944000[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.3e-05 0.032 16.4 0.1 18 48 3 33 1 35 0.89 2 9 0.0017 4.1 9.6 0.4 18 46 32 60 31 65 0.88 3 9 0.0022 5.3 9.3 0.3 26 48 73 95 70 98 0.84 4 9 0.00016 0.38 12.9 0.3 18 49 94 125 92 129 0.87 5 9 0.009 22 7.3 0.1 18 48 123 153 121 155 0.86 6 9 0.39 9.4e+02 2.1 0.7 21 48 155 182 152 187 0.83 7 9 0.0052 13 8.1 1.4 26 48 189 211 180 213 0.86 8 9 0.00099 2.4 10.4 0.9 18 48 210 240 209 242 0.87 9 9 0.0001 0.25 13.5 0.8 18 50 239 271 237 275 0.91
Sequence Information
- Coding Sequence
- atggcccgtcataccgGTGAAAAGCCTCATAagtgtcctcattgtgactatgaAGTAGTTCAAACGGGTAATTTAAAGAGGCACATAATGGCCCGGCATACTGGTGAAAAGCCTCGCAtgtgtcctcattgtgattataaaataagaaaagaaagtaGTTTAAAAAAGCATATTATGAAGTGTCATACTGGCTCAACATTCACATGGGATTCTCATAAGTGCCCTTACTGTGACTATGCAACAGTAGATGCACGTAACTTAAGAGTACACATAATGGCTCGTCACACTGGTGAGAAGCCACAGAAATGCCCCTATTGTGATTATAAGGTGGTTCAAATAGGCCATTTAAAGAGGCACATAATGGCTCGGCATACTGGTGAAAAGCCTCACAagtgtcctcattgtgattataaaatagaaaaagaaagtagTTTAAAGAAGCATATTATGAAGCATCATACTGGTGAAAGACCTCATGAATGTCACCTATGTGACTATAAAGCTGTGGAATTAGCTGCTTTAAAAAGGCATTTAAAGGCTCAACATTCATATGGGACTTCTCATAAGTGCCCTCACTGTATCTATGCAACAGTAGATGCACGTAACTTAAGAGTACACATAATGGCTCGTCACACTGGTGAGAAGCCACATAAATGCCCATATTGTGATTATAAGGCAGTTCAAATGAGCCATTTAAAGAGGCACATAATGGCTCGGCATACTGGTGAAAAGCCTCACAagtgtcctcattgtgattatgtAACAGTAATTGCACGTAATTTAAAAGTTCATACAATTGCTCGTCATGCAGCTGAAAAGGAGGGCAGACTTTGGCAAAGAAGACAAACTGAAATAGGCCAAAAAAGGAGAAGAATCGGCCCTTCTCAGGGCCCTGCAGACGAGTTGAGAAGCAAAATACGGACTAGAAGAGCCAGCGAGCGAGAGCCTTTCAGAAGGACCGCATACATAAAAGAGAAGCCGGAAATACCGTCACGTTCCCACTTTCCAACTAAAGGCGCACACTATCGCCATGATCAACGACAGAGGTCCATCCGAAGACTGGATACACCTGTACACAGGGGGTCAGCCATGTCCAAGGCAAGCGGAGCAGGATATTACTCGACAGTAGTGCAAGCAGGCCTAGCAGTTGGGAAAAACGGCACCAATTTCGAAGAACTATGTCCCATCAGTGAAGCTGCTAAAGGACTGCTCCCACTAGCAATCATGAAGAAAGAGGTCGGACTCAATATCCGCGATACAGGCAATCTGCTCACCAGAGCCACAAGAAGGAAAGGAAATGAATGTCTGCCAGGAAAGACTACAAAAGCTACAAGAAAGGACAACACATAG
- Protein Sequence
- MARHTGEKPHKCPHCDYEVVQTGNLKRHIMARHTGEKPRMCPHCDYKIRKESSLKKHIMKCHTGSTFTWDSHKCPYCDYATVDARNLRVHIMARHTGEKPQKCPYCDYKVVQIGHLKRHIMARHTGEKPHKCPHCDYKIEKESSLKKHIMKHHTGERPHECHLCDYKAVELAALKRHLKAQHSYGTSHKCPHCIYATVDARNLRVHIMARHTGEKPHKCPYCDYKAVQMSHLKRHIMARHTGEKPHKCPHCDYVTVIARNLKVHTIARHAAEKEGRLWQRRQTEIGQKRRRIGPSQGPADELRSKIRTRRASEREPFRRTAYIKEKPEIPSRSHFPTKGAHYRHDQRQRSIRRLDTPVHRGSAMSKASGAGYYSTVVQAGLAVGKNGTNFEELCPISEAAKGLLPLAIMKKEVGLNIRDTGNLLTRATRRKGNECLPGKTTKATRKDNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00165460;
- 90% Identity
- iTF_00165460;
- 80% Identity
- iTF_00165460;