Basic Information

Insect: Arma custos
Gene Symbol: -
Assembly: GCA_037127475.1
Location: CM073764.1:122930073-122940409[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.31 7.4e+02 2.4 0.1 26 48 351 373 341 375 0.88

2 12 4.9e-05 0.12 14.6 0.3 18 48 372 402 370 404 0.90

3 12 0.002 4.7 9.4 0.7 18 48 401 431 399 433 0.92

4 12 0.0043 10 8.3 0.5 18 48 430 460 428 462 0.86

5 12 0.047 1.1e+02 5.0 0.3 21 48 462 489 457 493 0.86

6 12 0.9 2.2e+03 0.9 0.1 35 48 505 518 495 520 0.76

7 12 0.007 17 7.7 0.1 18 48 517 547 515 550 0.90

8 12 0.0011 2.7 10.2 0.4 18 48 546 576 545 581 0.87

9 12 0.28 6.6e+02 2.6 0.3 26 48 583 605 578 607 0.82

10 12 2.5e-05 0.059 15.5 0.2 18 48 604 634 602 636 0.89

11 12 7e-05 0.17 14.1 0.8 18 50 633 665 632 666 0.92

12 12 2.5e-05 0.06 15.5 2.8 18 48 662 692 660 696 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.31	7.4e+02	2.4	0.1	26	48	351	373	341	375	0.88
2	12	4.9e-05	0.12	14.6	0.3	18	48	372	402	370	404	0.90
3	12	0.002	4.7	9.4	0.7	18	48	401	431	399	433	0.92
4	12	0.0043	10	8.3	0.5	18	48	430	460	428	462	0.86
5	12	0.047	1.1e+02	5.0	0.3	21	48	462	489	457	493	0.86
6	12	0.9	2.2e+03	0.9	0.1	35	48	505	518	495	520	0.76
7	12	0.007	17	7.7	0.1	18	48	517	547	515	550	0.90
8	12	0.0011	2.7	10.2	0.4	18	48	546	576	545	581	0.87
9	12	0.28	6.6e+02	2.6	0.3	26	48	583	605	578	607	0.82
10	12	2.5e-05	0.059	15.5	0.2	18	48	604	634	602	636	0.89
11	12	7e-05	0.17	14.1	0.8	18	50	633	665	632	666	0.92
12	12	2.5e-05	0.06	15.5	2.8	18	48	662	692	660	696	0.86

Sequence Information

Coding Sequence: ATGTATCATGTAGCAGCCGATCCACCCGATCTCCTACCACAGTGCTTGTCGCAGTATCAACAGCACTGTCAGCGAATCGGTCAAAAGAGCAAGAAGAAGAGCTGCAGAGGGAAAGTCCACGGAAGGCATTGCAAAATCAAACATACCACGGGACCTTCCGAGAGACGTAGCAGTAGCAACTTTCCGAATGACAACTGTCAACAGATAGTTGACAAGGATGTTCTGCCAATGCCCGTTCGTGGCTTTTCGGCCATCCGACGCCTTACCGCCCAGTATAAACAAGCTCGTCCCTCCATCGTTGCCTCACAAGTGACGTCCGTAAGGCCATCGCAGGTCGTAAGGTGTTGTGCAGCTCCTTCAGCATTGGAAAATAAGGGGCATAATGGTGAGATTAATACCAATACCAATTCGATGCAAGTGCTTCTGATGGAAGTCATGTCCAGTTGTCATTCGGAAAGTTACTACTGCTACGTCTCTCAGAAGGTCGGAAGGTTTTGCAATGCCTTCCGTGGGCTTTTCCTCTGCAGCTCTTCTTCTTGCTCTTTTGACCGATTCGCTGACAGTGCTGTTGATACTGCGACAAGCACTGTGGTAGGAGATCGAGTGGATCGGCTGCTTCCTGACACATCCCTGTTTAGCCAGACTGTCGGCCTTTTCATTACCCAAGAGACCGCAAGTGTCCTGGCACCCATTGCAGTACTATGTGTTGTCCTTTCTTGTAGCTGTTGTAGTCTTTCCTGGCAGACATTCATTTCCTTTCCTTCTTGTGGCTCTGGTGAGCAGATTGCCTGTATCGCGGATATTGAGTCCGACCGCTTTCTTCATCATTTTAGCAATTatgaaaACAGCACCAGTATAAGAATCAAAGAAGAGATAGATGAAATGAAAACCGTTAATGGGCTTATCAATGTGAAACAAGAAGAGGAAGAGTTTATAGTCCcagatgaaaGTGGTGAAGATGCCAAGGAGATGGAACAGCCTGGTTTAGAAACTACAGTTAATATCAATCTGAAAGAATGTGTTGAGTCTCCTGCAGCTGACAACCTTCATCAATGCCCTCGTTGTGACTATaaagttgaagaaaaaaaactgctaaaaaaacatattatgatCCGTCACAAAGgtgagaagcctcataaGTGTCCCCATTGTGACTATGAAGTAGTTCAAATGGGTAATTTAAAGAGGCACATAATGGCCCGGCATACTGAGGAAAAACCTTATAAGTGCTCTCATTGTGATTACGTTACAGTCATTGAACGTAATTTGAGACTACATATAATGGCCCGTCACACTGGAGAAAGGCCTCATAAATGTCCCCATTGTGAATATGAAGCAGTTCAAATAGGGAATTTAAAAAGACATATTATGGCAAGCCATACTGGCGAGAAGCCTCATGAGTGTCCTCACTGTGTATACAAAACAGCAGAAAGAAGTAGTTTAAAAAAGCATATTATGCTCCAACATACAGgtaataagttttataaatgtttCTATTGTGACTACAGAACAGTAGATTCAAGTGCTTTAAAAAGACATATTATGTTTCGTCATACAGGGGAGAAGCCTCATGAGTGTCcacattgtgactataaaataggaaaagaaAGTAGTTTAAAGAAGCACATTATGAAGCGTCATACTGGAGAAAGACCTCATGAATGTCCCCTATGTGACTATAAAGCTGTTGAAGTAGATGCTTTAAAAAGACATTTAAAGGCTCGACATTCAGATGGGACGTCTCATAAGtgccctcattgtgactatGCAACAGTAGTTGCACTTAACTTAAGAGTACACATAATGGCTCGTCACACAGGTGAGAAGCCACATAAATGCCCCTATTGTGATTATAAGGTGGTTCAGATGGGTAATTTAAAGAGGCACATAATGGCTCGACATACTGGTGAAAAGCCTCACAagtgccctcattgtgattatgtAACCGTAATTGCACGTAATTTAAAAgttcatataatggctcgtcatacagcTGAAAGGCCCCAtaaatgtccacattgtgaCTATGAAGTGGTTCAAGTGAGTAATTTAAGAAGACATATAATCGCGCGACATGCAAAGGAGAGTAAAGCAACAGCATTGCAATCTAGTTAG
Protein Sequence: MYHVAADPPDLLPQCLSQYQQHCQRIGQKSKKKSCRGKVHGRHCKIKHTTGPSERRSSSNFPNDNCQQIVDKDVLPMPVRGFSAIRRLTAQYKQARPSIVASQVTSVRPSQVVRCCAAPSALENKGHNGEINTNTNSMQVLLMEVMSSCHSESYYCYVSQKVGRFCNAFRGLFLCSSSSCSFDRFADSAVDTATSTVVGDRVDRLLPDTSLFSQTVGLFITQETASVLAPIAVLCVVLSCSCCSLSWQTFISFPSCGSGEQIACIADIESDRFLHHFSNYENSTSIRIKEEIDEMKTVNGLINVKQEEEEFIVPDESGEDAKEMEQPGLETTVNINLKECVESPAADNLHQCPRCDYKVEEKKLLKKHIMIRHKGEKPHKCPHCDYEVVQMGNLKRHIMARHTEEKPYKCSHCDYVTVIERNLRLHIMARHTGERPHKCPHCEYEAVQIGNLKRHIMASHTGEKPHECPHCVYKTAERSSLKKHIMLQHTGNKFYKCFYCDYRTVDSSALKRHIMFRHTGEKPHECPHCDYKIGKESSLKKHIMKRHTGERPHECPLCDYKAVEVDALKRHLKARHSDGTSHKCPHCDYATVVALNLRVHIMARHTGEKPHKCPYCDYKVVQMGNLKRHIMARHTGEKPHKCPHCDYVTVIARNLKVHIMARHTAERPHKCPHCDYEVVQVSNLRRHIIARHAKESKATALQSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00165413;
90% Identity: iTF_00165413;
80% Identity: iTF_00165413;