Basic Information

Insect: Arma custos
Gene Symbol: -
Assembly: GCA_037127475.1
Location: CM073759.1:4907183-4909069[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.041 98 5.2 0.6 18 48 8 38 2 40 0.87

2 19 0.023 54 6.0 0.3 21 49 40 68 36 72 0.89

3 19 0.04 96 5.3 0.3 19 48 67 96 66 98 0.89

4 19 0.013 32 6.8 0.5 21 49 98 126 95 131 0.89

5 19 0.32 7.6e+02 2.4 0.3 18 48 124 154 122 156 0.81

6 19 0.0032 7.8 8.7 0.5 18 48 153 183 149 185 0.92

7 19 4.6e-05 0.11 14.7 0.5 17 51 181 215 180 216 0.92

8 19 0.0056 14 8.0 0.1 20 49 242 271 238 275 0.91

9 19 0.17 4.1e+02 3.2 0.1 25 51 276 302 271 304 0.79

10 19 0.15 3.6e+02 3.4 0.4 18 48 298 328 296 331 0.86

11 19 0.0022 5.2 9.3 0.2 22 48 331 357 325 364 0.85

12 19 0.2 4.7e+02 3.0 0.2 21 43 388 410 385 419 0.82

13 19 0.045 1.1e+02 5.1 0.4 22 48 418 444 411 446 0.87

14 19 0.00067 1.6 10.9 0.2 21 50 446 475 442 479 0.90

15 19 0.17 4.1e+02 3.2 0.2 19 48 473 502 472 504 0.85

16 19 0.00099 2.4 10.4 0.2 20 49 503 532 498 536 0.90

17 19 0.0039 9.4 8.5 0.2 20 48 532 560 530 562 0.90

18 19 0.022 53 6.1 0.4 21 48 562 589 559 592 0.92

19 19 7.6e-05 0.18 14.0 0.3 17 49 587 619 585 624 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.041	98	5.2	0.6	18	48	8	38	2	40	0.87
2	19	0.023	54	6.0	0.3	21	49	40	68	36	72	0.89
3	19	0.04	96	5.3	0.3	19	48	67	96	66	98	0.89
4	19	0.013	32	6.8	0.5	21	49	98	126	95	131	0.89
5	19	0.32	7.6e+02	2.4	0.3	18	48	124	154	122	156	0.81
6	19	0.0032	7.8	8.7	0.5	18	48	153	183	149	185	0.92
7	19	4.6e-05	0.11	14.7	0.5	17	51	181	215	180	216	0.92
8	19	0.0056	14	8.0	0.1	20	49	242	271	238	275	0.91
9	19	0.17	4.1e+02	3.2	0.1	25	51	276	302	271	304	0.79
10	19	0.15	3.6e+02	3.4	0.4	18	48	298	328	296	331	0.86
11	19	0.0022	5.2	9.3	0.2	22	48	331	357	325	364	0.85
12	19	0.2	4.7e+02	3.0	0.2	21	43	388	410	385	419	0.82
13	19	0.045	1.1e+02	5.1	0.4	22	48	418	444	411	446	0.87
14	19	0.00067	1.6	10.9	0.2	21	50	446	475	442	479	0.90
15	19	0.17	4.1e+02	3.2	0.2	19	48	473	502	472	504	0.85
16	19	0.00099	2.4	10.4	0.2	20	49	503	532	498	536	0.90
17	19	0.0039	9.4	8.5	0.2	20	48	532	560	530	562	0.90
18	19	0.022	53	6.1	0.4	21	48	562	589	559	592	0.92
19	19	7.6e-05	0.18	14.0	0.3	17	49	587	619	585	624	0.90

Sequence Information

Coding Sequence: ATGAAAAGACATTTAATGGCCCGTCATAAAGAgaagaagcctcatcaatgcccTCACTGtaattataaatcagcacaTTCTGGAAATATGAACAGACATGTAATGGCCAGTCATAatggtgagaagcctcatcaatgtcctcactgtgttTATAGATCAACAGAATCTGGAAAGCTTAAATTACATGTAATGGtccgtcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcaaaaTCCGAAGGTGTGAAAAGGCATATAATGGTACATCATAAAggggagaagcctcatcaatgtcctcactgtgattataaatcagcagaaTCTGGAAGTATGAAAAGAcatgtaatggcccgtcatacacaggagaaacctcatcaatgtcctcactgtgattataaatcagcagaaTCTGGAGTTATGAAAATAcatgtaatggcccgtcatacaggggAGAAACCTCATCAGTGTCCTTACTGTCAGTACAAATCATCAGAATCTGGAGTTATTAAGAGACATGTAAAGGCCCGTCATACAGGGGAGAAACCTCATCGTTGTCCTCACTGTATTTATAAATCAGCAgaatctggaaatatgaaaagacATATTATGGTTCGTCACACAGGTAAGAAGcttcatcaatgtcctcactgtgattataaatcagcagaaTCTGGAAAGCTTAAATTACATATAATGGTACATCATAAAGGGGAGAAGCcgcatcaatgtcctcactgtgattataaatcagcagaatctggaaatatgaaaagacAAATTATGAtccgtcatacaggtgaaaagctTCATCAATGTCcccactgtgattataaatcaataGAATCTGGAATTATGAAAAGACATTTAATGGCCCGTCATAAAGAgaagaagcctcatcaatgctCTCACTGTAATTACAAAACAGCGCattctggaaatatgaaaagacATGTAATGGCCAGTCATAAAGAgaagaagcctcatcaatgcccTCACTGTAATTACAAATCAGCACAgtctggaaatatgaaaagacATGTAATGGCCAGTCATACAGGGGAGAAACCTCATAAATGTGCttactgtgattataaatcagcagaaTCTGGAAAGATTAAATTACATGTTATGGGTGATCATACAgatgagaagcctcatcaatgtcctctctgtgattataaatcagcagaaTCTGAACTTATGAAAAGACATTCAATAGCCTGTCATAAAGAGAAGAAGCCACATCAATGCCCTCACTGTAATTACAAATCAGCACattctggaaatatgaaaagacATGTAATGGCCAGTCATACAGGGGagaaacctcatcaatgtccttactgtgattataaatcagcagaaTCTGGAAAGATTAAAAGACATATTATGGTCCGTCATACAgctgagaagcctcatcaatgtcctcactgtgattataaatcaacaGAATCTGGAAAGCTTAAATTACATATAATGGTGCATCATAAAggggagaagcctcatcaatgtcctcactgtgattataaatcagcagaaTCTGGAAAGCTTAAAAGACATATTATGGTCCGTCATACAGGGGAGAAACcttatcaatgtcctcactgtgattataaatcagcagaatctggaaatatgaaaagacATATTATGGTCcatcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcatcaGAATCTGGAGTTATTAAGAGACATGTAAAGGCCCGTCATACAGGGGagaaacctcatcaatgtccacactgtgattataaatcagcagaatctggaaatatgaaaagacATATTATGGttcgtcatacaggtgagaagccttaTCAATGTCCTCTCTAA
Protein Sequence: MKRHLMARHKEKKPHQCPHCNYKSAHSGNMNRHVMASHNGEKPHQCPHCVYRSTESGKLKLHVMVRHTGEKPHQCPHCDYKSAKSEGVKRHIMVHHKGEKPHQCPHCDYKSAESGSMKRHVMARHTQEKPHQCPHCDYKSAESGVMKIHVMARHTGEKPHQCPYCQYKSSESGVIKRHVKARHTGEKPHRCPHCIYKSAESGNMKRHIMVRHTGKKLHQCPHCDYKSAESGKLKLHIMVHHKGEKPHQCPHCDYKSAESGNMKRQIMIRHTGEKLHQCPHCDYKSIESGIMKRHLMARHKEKKPHQCSHCNYKTAHSGNMKRHVMASHKEKKPHQCPHCNYKSAQSGNMKRHVMASHTGEKPHKCAYCDYKSAESGKIKLHVMGDHTDEKPHQCPLCDYKSAESELMKRHSIACHKEKKPHQCPHCNYKSAHSGNMKRHVMASHTGEKPHQCPYCDYKSAESGKIKRHIMVRHTAEKPHQCPHCDYKSTESGKLKLHIMVHHKGEKPHQCPHCDYKSAESGKLKRHIMVRHTGEKPYQCPHCDYKSAESGNMKRHIMVHHTGEKPHQCPHCDYKSSESGVIKRHVKARHTGEKPHQCPHCDYKSAESGNMKRHIMVRHTGEKPYQCPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00165420;
90% Identity: iTF_00165420;
80% Identity: iTF_00165420;