Acus000781.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073759.1:12028209-12037066[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0097 2.1 11.0 8.4 1 23 15 38 15 38 0.96 2 22 4.5e-05 0.0097 18.3 2.7 1 23 44 67 44 67 0.98 3 22 0.0007 0.15 14.6 1.3 1 23 73 96 73 96 0.95 4 22 6.9e-05 0.015 17.7 2.0 1 23 102 125 102 125 0.96 5 22 0.072 15 8.2 3.8 1 23 131 154 131 154 0.92 6 22 0.00034 0.074 15.5 3.0 1 23 160 183 160 183 0.96 7 22 0.00035 0.076 15.5 1.8 1 23 189 211 189 212 0.96 8 22 0.00041 0.089 15.3 4.0 1 23 218 241 218 241 0.98 9 22 0.00051 0.11 15.0 3.1 1 23 247 270 247 270 0.96 10 22 0.0012 0.25 13.9 4.1 1 23 276 298 276 299 0.96 11 22 6.7e-05 0.015 17.8 3.4 1 23 305 328 305 328 0.96 12 22 0.021 4.5 9.9 0.7 1 23 334 357 334 357 0.94 13 22 7.6e-05 0.016 17.6 3.2 1 23 363 385 363 386 0.96 14 22 0.00022 0.047 16.2 2.8 1 23 392 414 392 415 0.95 15 22 0.0046 0.99 12.0 0.8 1 23 421 444 421 444 0.94 16 22 0.0097 2.1 11.0 8.4 1 23 450 473 450 473 0.96 17 22 1.6e-06 0.00035 22.9 3.2 1 23 479 502 479 502 0.98 18 22 0.00081 0.18 14.4 1.0 1 23 508 531 508 531 0.95 19 22 0.0003 0.065 15.7 2.7 1 23 541 564 541 564 0.96 20 22 0.0027 0.58 12.7 1.3 1 23 578 601 578 601 0.96 21 22 0.0022 0.47 13.0 1.5 2 23 608 629 607 630 0.95 22 22 0.0019 0.41 13.2 1.0 1 23 636 659 636 659 0.94
Sequence Information
- Coding Sequence
- ATGAAAAACCATGTAATGGCCCTTCATGCTGGTGAGAAGCCTtttcaatgccctcattgtgattataaatctgtacattCTGGAcatatgaaaaaacatatacaacatcgtcataccggtgagaagccttttcaatgtcctcattgtgattataaatctgtaacatctggaaatatgaaaaaacatatacaacgtcgtcataccggtgagaagccttttcaatgtcctcattgtgattataaatctgtaacatctggacaaatgaaaaatcatgtcCAAGCTCGTCATTCCGGTGAGAAGCCTtttcaatgtcctcattgtgattataaatctgtaacatctggaaatatgaaaaaacatatacaacttcgtcataccggtgagaagccTTTTCTATGtactcattgtgattataaatctgtaagatctggacaaatgaaaaaccatGTACAAGCttgtcataccggtgagaagccctatcaatgccctcattgtgattataaatccgTAGCATCtggaaatttgaaaaaacatatacaacatcgtcataccggtgagaagccTTTTCAATGtgctcattgtgattataaatctgtaacatctggagcattgaaaaaccatatacaagctcaTCATACGGGTGAGAAGCCTtttcaatgccctcattgtgatcatcaatctgtaacatctggaaatatgaaaaaacatatacaacgtcgtcataccggtgagaagccttttcaatgtcctcattgtgattataaatctgtagcatctggaaatttgaaaaaacatatacaacatcgtcataccggtgagaagccTTTTCAATGtactcattgtgattataaatctgtaacatctgtaCAATTGAAATACCATATACAAGCTCATCATACGGGTAAAaagtcctatcaatgccctcattgcgATTATAAATCTACAACATTTAGAAATTTGAAAAGACAtttaatggcccgtcatacaagtgagaagcctcatcaatgtcctcattgtgattataaatctgtggAATCAGGAGCTATGAAAATACACTACATGGCCTGGCACAAAGGTGAGAAGCtatatcaatgccctcattgtgattataaatctgtacaatctggaaatatgaaaaaacatgtaagggcccatcatactggtgagaagccgtttcaatgccctcattgtgattataaatctgtaacatctggaaatatgaaaaaacatgtaatggcccatcatactggtgagaagccttttcaatgccctcattgtgattataaatctataaaatctGGAGATGTGAAAAACcatgtaatggcccgtcatactggtgagaagcctttccaatgccctcattgtgattataaatctgtacattCTGGAcatatgaaaaaacatatacaacatcgtcataccggtgagaagccttttcaatgtcctcattgtgattataaatttgtaacatctggaaatatgaaaaaacatatacaacgtcgtcataccggtgagaagccttttcaatgtcctcattgtgattataaatctgtaacatctggagaaatgaaaaatcatgtacaagctcgtcatactgctcgtcataccggtgtgaagtcctatcaatgccctcattgtgattataaatctgtacaaTCTGGAcatatgaaaaaccatatacaagctcgtcataccgGTTCCAAAAATAGTTGCCATAAACTTCTGAAGTCTCATCAATGTCcttattgtgattataaatctgtaagatCTGGACAAATTAAAGATCATGTACAAtctcgtcataccggtgagaagtccaaccaatgccctcattgtgattataagtcaGTACAATTAGGGAATATGAATAGTCATATAATGGCCCATCATACCAGCGTGAGGCCTtttcaatgccctcattgtgattataaatctgcaAGATCTGGAAGCATAAAAAACCATGTGCAAGCTCGTCATACCAAGTTATTAAAGAAGGTTGAAGAAAACACAAGAGACCAGAACGGCTGCAAACTTTGGCACGAATTAAGATTTGGTAGAATAATGGCCTCCAAAGCTTATGAAGTTAAAACATGTAAAACAAGTGATGGTGCTTTggtatag
- Protein Sequence
- MKNHVMALHAGEKPFQCPHCDYKSVHSGHMKKHIQHRHTGEKPFQCPHCDYKSVTSGNMKKHIQRRHTGEKPFQCPHCDYKSVTSGQMKNHVQARHSGEKPFQCPHCDYKSVTSGNMKKHIQLRHTGEKPFLCTHCDYKSVRSGQMKNHVQACHTGEKPYQCPHCDYKSVASGNLKKHIQHRHTGEKPFQCAHCDYKSVTSGALKNHIQAHHTGEKPFQCPHCDHQSVTSGNMKKHIQRRHTGEKPFQCPHCDYKSVASGNLKKHIQHRHTGEKPFQCTHCDYKSVTSVQLKYHIQAHHTGKKSYQCPHCDYKSTTFRNLKRHLMARHTSEKPHQCPHCDYKSVESGAMKIHYMAWHKGEKLYQCPHCDYKSVQSGNMKKHVRAHHTGEKPFQCPHCDYKSVTSGNMKKHVMAHHTGEKPFQCPHCDYKSIKSGDVKNHVMARHTGEKPFQCPHCDYKSVHSGHMKKHIQHRHTGEKPFQCPHCDYKFVTSGNMKKHIQRRHTGEKPFQCPHCDYKSVTSGEMKNHVQARHTARHTGVKSYQCPHCDYKSVQSGHMKNHIQARHTGSKNSCHKLLKSHQCPYCDYKSVRSGQIKDHVQSRHTGEKSNQCPHCDYKSVQLGNMNSHIMAHHTSVRPFQCPHCDYKSARSGSIKNHVQARHTKLLKKVEENTRDQNGCKLWHELRFGRIMASKAYEVKTCKTSDGALV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00165721;
- 90% Identity
- iTF_00165721;
- 80% Identity
- iTF_00165721;