Basic Information

Insect: Arma custos
Gene Symbol: Rfx1
Assembly: GCA_037127475.1
Location: CM073764.1:127671469-127699952[+]

Transcription Factor Domain

TF Family: RFX
Domain: RFX domain
PFAM: PF02257
TF Group: Basic Domians group
Description: RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2.5e-37 9.8e-33 114.6 0.1 3 78 407 482 405 483 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2.5e-37	9.8e-33	114.6	0.1	3	78	407	482	405	483	0.97

Sequence Information

Coding Sequence: ATGGCATCACAGGGCGGTGATACAACTGTTACAGTGGTCCCACAAACTCAAATActtcagccatggagCGATCCTGTAGGATCTGCTCACCCTCCTGGGGCTGTAGGATCTGCTCACCCTCCTGGGGCTGTAGGATCTGCTAACCCTCCTGGGGCTGTAGGATCTGCTCACCCTCCTGGGGCTGTAGGATCTGCTAACCCTCCTGGGGCTGTAGGATCTGCTAACCCTCCTGGGGCTGTAGGATCTGCTCACCCTCCTGGGGCTGTAGGATCTGCTCACCCTCCTGGGGCTGTAGGATCTGCTCACCCTCCTGGGGCTGTAGGATCTGCTCACCCTCCTGGGGCTGTAGGATCTGCTCACCCTCCTGGGGCTGTAGGATCTGCTCACCCTCCTGGGGCTGTAGGATCTGCTCACCCTCCTGGGGCTGTAGGATCTGCTAACCCTCCTGGGGCTGTAGGATCTGCTCACCCTCCTGGGGCTGTAGGATCTGCTAACCCTCCTGGGGCTGTAGGATCTGCTCACCCTCCTGGGGCTGTAGGATCTGCTAACCCTCCTGGGGCTGTAGGATCTGCTCACCCTCCTGGGGCTGTAGGATCTGCTAACCCTCCTGGGGCTGTAGGATCTGCTCACCCTCCTGGGGCTGTAGGATCTGCTTACCCTCCTGGGCCTAGCAGTCTCAAAAACCTAgaagAAGGTGGTGTTTTGTCTTCTGGTGGGAATTCTGAAGAAGGTATTCAAGGACCAGAATCAAGTCCTGGTCATTATATTACTGTTACAGCTTCTGAAGGTGGTGGTGAAGATGTTACCCATTCATATGTTCAATATATAGAAAGCACCGGTGAACAGACAATATACACTACTTCAAATGGCCAAATGTACCCTGTTTATACCGTTGGAGAATCAGGGGCTATGTATACTCCAAGCTCTGGCCAATATTATAGCCCGGGCAATACTACTCCAGTCACTTATACACAGGTGGCTAACAGCCTTAGTGGAGGACCTGCTGGTCAGCTGATCGGAAACACTGCTTACCTGATCCAGCAAGGAGTAGAGACTGAGAGTATGATTGCTAGGGCTAGCCCGCAGGCTGTTTCAGCTGATGTGGCTTACCTTGTAAATGCCAGCGGTGGAGGATCTCAAATTTCTGATTCCACACCAGATTCCTCAACTACTGCTTCAAATGCTCCCAACATTGTTCATGCTACACGTGTTTCTCCTACTACAgTACAGTGGCTTTTAGAAAACTATGAAACAGCTGAGGGTGTTTCACTTCCACGTTCTACACTCTACAATCATTACTTAAGGCACTGTTATGAAAATAAACTTGATCCTGTAAATGCTGCATCTTTTGGGAAACTCATTCGTTCCGTTTTCTTAGGTCTTAGAACCAGGCGTCTTGGTACTAGggggaATTCTAAGTACCATTATTATGGTATTCGGTTAAAAGCTAGCAGTTCATTGCTATGCCAGTCTCAAGATTCTGGTGGTGAAGAAGGGAGTTCGAGAGGTGGGAAAAGATTTAGAGTTTCTCAAACTAAGCTGGAAGAACCTGTTCAAGCAACTCCTTTACAGGAGTACCTCGGTGACAGTTCTCAAGCAATACCTGAGCTACCTGAAGTAGAAATTCCTCCTGGCCTTCCGCTGCCTCACATGTGCTCACTTGAGGACATTGATACTTTTAGGTCTATTTACAGGGAGCATTGTGAGGCTTTCTTAGATGCAATAGTCAATCTTGAATTTGCCACTATTGAAACACTTTGGCGAGAGTTCTGGAGATCTCAAGAAAATACAAATGGAGATGAGTGcgaagaagaaaaatatctgtctaaaacGAAGCTTTTTATGATCTCCAAATTGAGGCCTGTACAGGAATTCGTAAAGCGGGTCGATTTTCTTTTCTACCAAAACTTAGTTCAAGTTCTTATTCCAGATGTTCTTCGGCCTATACCAAgCTCTCTTACTCAGGCCATAAGGAACTTCGCAAAAGGCCTTGAATCCTGGTTGTCCTCTGCGATGGTTGGGTGCCCTCCTGACATGGTTGATATTAAGgtaTCTGCCGTTTGTGCCCTTGGTCAGACATTAAGAAGATATACATCACTCAATCACCTGGCTCAAGCTGCACGTGCTGTTCTTCAAAATTCTGTCCAGATTAACCAAATGCTGGCTGACTTGAATAGAGTCGATTTCCACAATGTACAAGAACAGgcATCTTGGGTCTGTGAATGCGATGGGGGATTGGTTGCTAGGCTGGAGGCTGATTTTAAAACAACACTCCAAACTCAGAACTCTCTTGAAGAGTGGGCATCTTGGCTTAAGGCTGTTGTTAATTCAGTTCTTAAACCTTACCGTGGAAGAAGAGGCTTCTCTGCTGCTGCCAGGCAACTTCTCTTGAAGTGGTCGTTCTATAGTTCCATGGTGATCAGAGATTTAACCCTTAGATCTGCCGCCAGCTTTGGATCTTTCCATCTCATTAGGCTACTATATGATGAATATATGTTCTATCTAGTGGAGCATCAAGTAGCGAGTGCTACTGGTACCAGTCCTATTGCAGTAATGGCTACTGCATAA
Protein Sequence: MASQGGDTTVTVVPQTQILQPWSDPVGSAHPPGAVGSAHPPGAVGSANPPGAVGSAHPPGAVGSANPPGAVGSANPPGAVGSAHPPGAVGSAHPPGAVGSAHPPGAVGSAHPPGAVGSAHPPGAVGSAHPPGAVGSAHPPGAVGSANPPGAVGSAHPPGAVGSANPPGAVGSAHPPGAVGSANPPGAVGSAHPPGAVGSANPPGAVGSAHPPGAVGSAYPPGPSSLKNLEEGGVLSSGGNSEEGIQGPESSPGHYITVTASEGGGEDVTHSYVQYIESTGEQTIYTTSNGQMYPVYTVGESGAMYTPSSGQYYSPGNTTPVTYTQVANSLSGGPAGQLIGNTAYLIQQGVETESMIARASPQAVSADVAYLVNASGGGSQISDSTPDSSTTASNAPNIVHATRVSPTTVQWLLENYETAEGVSLPRSTLYNHYLRHCYENKLDPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRLKASSSLLCQSQDSGGEEGSSRGGKRFRVSQTKLEEPVQATPLQEYLGDSSQAIPELPEVEIPPGLPLPHMCSLEDIDTFRSIYREHCEAFLDAIVNLEFATIETLWREFWRSQENTNGDECEEEKYLSKTKLFMISKLRPVQEFVKRVDFLFYQNLVQVLIPDVLRPIPSSLTQAIRNFAKGLESWLSSAMVGCPPDMVDIKVSAVCALGQTLRRYTSLNHLAQAARAVLQNSVQINQMLADLNRVDFHNVQEQASWVCECDGGLVARLEADFKTTLQTQNSLEEWASWLKAVVNSVLKPYRGRRGFSAAARQLLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHQVASATGTSPIAVMATA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00763625;
90% Identity: -
80% Identity: -