Agoe117798.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463836.1:2263345-2272525[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.088 3.9e+03 0.9 0.0 18 44 235 262 228 269 0.79 2 8 0.27 1.2e+04 -0.7 0.0 26 45 271 290 261 297 0.80 3 8 0.035 1.5e+03 2.1 0.0 21 52 294 325 286 327 0.85 4 8 0.038 1.7e+03 2.0 0.0 21 43 322 344 318 349 0.87 5 8 9.1e-05 4 10.4 0.1 21 45 350 374 344 382 0.88 6 8 0.18 7.9e+03 -0.1 0.0 22 43 379 400 376 402 0.86 7 8 0.0032 1.4e+02 5.4 0.2 14 43 398 428 389 433 0.73 8 8 3.5e-06 0.15 14.9 0.0 21 45 434 458 426 462 0.89
Sequence Information
- Coding Sequence
- ATGGAATATTCCGAGACGAATGAGGACAGCAAGTGCGATATGGTGTACCGACTGCTATGTATAGGGTGTCTGTGTGACGGACGGACGATCAAGACCCTCACAGACCAGGCGCTGACAGAGTATTACATGGACATACTATTTCAACATGACCAGGTGTCCATGTCGGCTCCGGTACCGTCTCCGCGGCTCTGCTGGGAGTGCGAGGCTTTGCTGACGAGAGCATTCCACTTTACCAAGCAAGTGCAGGAGTCATACGTCACACTGCAGAATGCACTAGCCAAGCTTGATATTAATGAGACCGCCACATCGCTGGCACAACAGCTGACGCGCGGCTCACGACTCAGCCCCTTCTCGAGAGCAATAGTAGACATACCACCCGACGATGGAGTAGCCCCCAGTGACGCGCGGGATGAGTATGTCCCGCTGCTGGCTAGAGTGACGGTGGAGATTGAGGAGTTTGAAGGCAAGGAGGTTGACTTGGCCGGTGGTGTTGGCAGGGAAGGAATGGATGGAGCTGGTGAGCCGTCAACAGAAATAGCAGACGAAACACTAAGCAGGCAGAGTTACATGTACCAAGACCCAGTAGCGACAACCTCCGAAAAAGGGACGAGTTATATTGACAGCAGTGGCGCCGAGAAACGATTCCAGTGTGCAGTGTGCTCGAAAGGATTCTTCTATAACAGCGACCTTAAATCTCACATGAGAAGTCACACAGGCGAGAAACCTTTCCAGTGTATGATGTGCGAAAAAAGTTTCAATCAAAACGGAAAACTGACAATTCACATGAGAACTCATACTGGCGAGAAGCTAATGTGCACGGTTTGCCAAAAAGGATTCAATCAAACAAGCGACTTGAAAGTTCACATGAGGACTCATACCGGCGAGAAACCATATCCGTGTATAACGTGCGATAAAGCGTTTAAGAAAAGTGGCGACTTGAAAATTCACATGAGGATTCATACGGGTGAGAAACCTTATAAGTGTTCGGTGTGTCAGAAAGGTTTCAACCAAAGTGGTGAGTTGACTATTCACACGAGGACTCACACGGGAGAAAAACCATATAAGTGTACATTATGCGAAAAAGTGTACAATCAAAGTGGGAAGTTGAGAAATCACATGAGAACTCACACTGGAGAACGGCCGTATAAGTGTAAAGTGTGCGGGAAAGCTTTCAATCAAAATGGCGAGTTGAAAATTCATACGAGAAGTCATACAGGCGAGAAGCCTTATAAGTGCCCGGTGTGTCAGAAAGGTTGCACACATGGGAGTGAGCTGAAAGTGCACATGAGGACTCATACGGGGGAGAAGCCTTTCCGGTGCCCGGTGTGCCCGGCAGGATTTAACCAAAGTGGCAATTTGAAGAGTCACATGAAAACGCATGCGGTCGATACTTATATACCAATTCTCAATGTTCCTAGCCAGGTTTAG
- Protein Sequence
- MEYSETNEDSKCDMVYRLLCIGCLCDGRTIKTLTDQALTEYYMDILFQHDQVSMSAPVPSPRLCWECEALLTRAFHFTKQVQESYVTLQNALAKLDINETATSLAQQLTRGSRLSPFSRAIVDIPPDDGVAPSDARDEYVPLLARVTVEIEEFEGKEVDLAGGVGREGMDGAGEPSTEIADETLSRQSYMYQDPVATTSEKGTSYIDSSGAEKRFQCAVCSKGFFYNSDLKSHMRSHTGEKPFQCMMCEKSFNQNGKLTIHMRTHTGEKLMCTVCQKGFNQTSDLKVHMRTHTGEKPYPCITCDKAFKKSGDLKIHMRIHTGEKPYKCSVCQKGFNQSGELTIHTRTHTGEKPYKCTLCEKVYNQSGKLRNHMRTHTGERPYKCKVCGKAFNQNGELKIHTRSHTGEKPYKCPVCQKGCTHGSELKVHMRTHTGEKPFRCPVCPAGFNQSGNLKSHMKTHAVDTYIPILNVPSQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00163504;
- 90% Identity
- iTF_00163504;
- 80% Identity
- iTF_00163504;