Basic Information

Insect: Argyresthia goedartella
Gene Symbol: -
Assembly: GCA_949825045.1
Location: OX463836.1:2297862-2302166[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.043 1.9e+03 1.8 0.0 18 44 143 170 136 177 0.79

2 8 0.22 9.9e+03 -0.4 0.0 26 45 179 198 170 205 0.80

3 8 0.015 6.7e+02 3.3 0.0 21 51 202 232 196 234 0.85

4 8 0.029 1.3e+03 2.4 0.0 21 43 230 252 226 257 0.87

5 8 6.9e-05 3.1 10.8 0.1 21 45 258 282 252 290 0.88

6 8 0.1 4.4e+03 0.7 0.1 21 43 286 308 282 312 0.86

7 8 0.0024 1.1e+02 5.8 0.2 14 43 306 336 297 341 0.73

8 8 3.1e-06 0.14 15.1 0.0 21 45 342 366 337 370 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.043	1.9e+03	1.8	0.0	18	44	143	170	136	177	0.79
2	8	0.22	9.9e+03	-0.4	0.0	26	45	179	198	170	205	0.80
3	8	0.015	6.7e+02	3.3	0.0	21	51	202	232	196	234	0.85
4	8	0.029	1.3e+03	2.4	0.0	21	43	230	252	226	257	0.87
5	8	6.9e-05	3.1	10.8	0.1	21	45	258	282	252	290	0.88
6	8	0.1	4.4e+03	0.7	0.1	21	43	286	308	282	312	0.86
7	8	0.0024	1.1e+02	5.8	0.2	14	43	306	336	297	341	0.73
8	8	3.1e-06	0.14	15.1	0.0	21	45	342	366	337	370	0.90

Sequence Information

Coding Sequence: atgacccagggtatcctaGAGACTGCCACATCGCTGGCACAACAGCTGACGCGCGCCTCGCGCCTCAGCCCCTTCTCGAGAGCCATAGTAGACATAGCACCCGACGATGGAGTAGCCCCCAGTGACGCGCGGGATGAGTATGTCCCGCTGCTGGCTAGAGTGACGGTGGAGATTGAGGAGTTTGAAGGCAAGGAGGTTGACTTGGCCGGTGGTGTTGGCAGGGAAGGAATGGATGGAGCTGGTGAGCCGTCAACAGAAATAGCAGACGAAACACTAAGCAGGCAGAGTTACATGTACCAAGACCCAGTAGCGACAACCTCCGAAAAAGGGACGAGTTATATTGACAGCAGTGGCGCCGAGAAACGATTCCAGTGTGCAGTGTGCTCGAAAGGATTCTTCTATAACAGCGACCTTAAATCTCACATGAGAAGTCACACAGGCGAGAAACCTTTCCAGTGTACGATGTGCGAAAAAAGTTTCAATCAAAACGGAAAGCTGACAATTCACATGAGAACTCATACTGGCGAGAAGCTAATGTGCACGGTTTGCCAAAAAGGATTCAATCAAACAAGCGACTTGAAAGTTCACATGAGGACTCATACCGGCGAGAAACCATATCCGTGTACAACGTGCGATAAAGCGTTTAAGAAAAGTGGCGACTTGAAAATTCACATGAGGATTCATACGGGTGAGAAACCTTATAAGTGTTCGGTGTGTCAGAAAGGTTTCAACCAAAGTGGTGAGTTGACTATTCACACGAGGACTCACACGGGAGAAAAACCATATAAGTGTACATTATGCGAAAAAGTGTACAATCAAAGTGGGAAGTTGAGAAATCACATGAGAACTCACACTGGAGAACGGCCGTATAAGTGTAAAGTGTGCGGGAAAGCTTTCAATCAAAATGGCGAGTTGAAAATTCATACGAGAAGTCATACAGGCGAGAAGCCTTATAAGTGCCCGGTGTGTCAGAAAGGTTGCACACATGGGAGTGAGCTGAAAGTGCACATGAGGACTCATACGGGGGAGAAGCCTTTCCGGTGCCCGGTGTGCCCGGCAGGATTTAACCAAAGTGGCAATTTGAAGAGTCACATGAAAACGCATGCGGTAGATACTTATATACCAATTCTCAATGTTCCTAGCCAGGTTTAG
Protein Sequence: MTQGILETATSLAQQLTRASRLSPFSRAIVDIAPDDGVAPSDARDEYVPLLARVTVEIEEFEGKEVDLAGGVGREGMDGAGEPSTEIADETLSRQSYMYQDPVATTSEKGTSYIDSSGAEKRFQCAVCSKGFFYNSDLKSHMRSHTGEKPFQCTMCEKSFNQNGKLTIHMRTHTGEKLMCTVCQKGFNQTSDLKVHMRTHTGEKPYPCTTCDKAFKKSGDLKIHMRIHTGEKPYKCSVCQKGFNQSGELTIHTRTHTGEKPYKCTLCEKVYNQSGKLRNHMRTHTGERPYKCKVCGKAFNQNGELKIHTRSHTGEKPYKCPVCQKGCTHGSELKVHMRTHTGEKPFRCPVCPAGFNQSGNLKSHMKTHAVDTYIPILNVPSQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00163504;
90% Identity: iTF_00163504;
80% Identity: iTF_00163502;