Basic Information

Insect: Argyresthia goedartella
Gene Symbol: -
Assembly: GCA_949825045.1
Location: OX463813.1:20610335-20626629[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.054 14 9.1 2.5 1 23 212 235 212 235 0.97

2 9 0.13 35 7.9 5.2 1 23 241 263 241 263 0.97

3 9 0.0003 0.078 16.2 1.5 1 23 295 318 295 318 0.98

4 9 2.5e-05 0.0065 19.6 1.4 3 23 324 346 323 346 0.93

5 9 0.93 2.4e+02 5.2 4.0 2 23 355 378 354 378 0.88

6 9 0.1 27 8.2 0.4 3 21 397 415 397 420 0.95

7 9 0.0026 0.69 13.2 1.6 1 23 428 451 428 451 0.96

8 9 8e-06 0.0021 21.2 0.8 1 23 457 480 457 480 0.98

9 9 0.32 82 6.7 0.0 2 12 490 500 489 503 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.054	14	9.1	2.5	1	23	212	235	212	235	0.97
2	9	0.13	35	7.9	5.2	1	23	241	263	241	263	0.97
3	9	0.0003	0.078	16.2	1.5	1	23	295	318	295	318	0.98
4	9	2.5e-05	0.0065	19.6	1.4	3	23	324	346	323	346	0.93
5	9	0.93	2.4e+02	5.2	4.0	2	23	355	378	354	378	0.88
6	9	0.1	27	8.2	0.4	3	21	397	415	397	420	0.95
7	9	0.0026	0.69	13.2	1.6	1	23	428	451	428	451	0.96
8	9	8e-06	0.0021	21.2	0.8	1	23	457	480	457	480	0.98
9	9	0.32	82	6.7	0.0	2	12	490	500	489	503	0.86

Sequence Information

Coding Sequence: ATGGACAATGCTAGTTACCATTCTGTTATCGTAAATAAAGCCCCTACAACACAGAATCGCAAAGATGAGATAAAAGAATGGCTTACATTGACTACTATTCAATTTGAAGAGTACCATACGAACGCAGAACTGGTGTGTCTAGAAAAATGGTATAAGCCAGAGCCAGTATATGAAGCCGATGGAATATTAAAACAGAATGGTCATGAGACAGAAACTGACATCAAGACTTTATCAAAACTATCATGGCAACACATAAACATGAACACGTTCCACACTGAATTCTCGCAAGATACTGTAAAGAAAGAAGTCAATTATGAATCTGATAATGATGACGTTAATGACAATGTTGAACAACATGAGACAGTCAGTTCAGAAATTATTAACAAACACactgtaaataaaaatacattaatgGTTTTGCAAAATCCGATAGCGATTAAAATCGAACCTATACAAGTAAAAGTATATTCATCACATAAAGTAAAAGACACTGAAAATGTTGAATCGGAAAAAGCTAAAAATATAGAACCACAGACTGCGAAACCAGATTATACAATCAAAAAATTGTCTTTGGATGAATTGGAAAAGATGAGGCAAGAAGATCGGGTGTCGTGGAGATATGCGAGGGGTCTTCACAAATGTGAGACTTGCATTATTTCTTACACCAATAAGAAAGCATTCGAAACACATCGCTTAACATTACATTCTGAGAATTTCAGCCACGAGTGTAAGATATGTCAACAAAGATTCAACTGCAAAGACAGCATGGAGAACCACTACCAAGTACATTTCACATGCTTCGAATGTTCAGAGTGTAGCTTCCGCCACACACGATATGACCTCGTGATAAAACACTACACTGAGAAACATTGTGGTAGTAAATACCAGTGTAAAGAGTGTCAAATCGTATTTGAAAGAAGACTGCAAATGTCCTACCACATGAACACACGGCATAAAGAGCTTCCGAGGTGTGACGTTCCACTGTGTAGGAAGACATTTAAGACTAATTTCTGGCTACAAAATCATATGAAAACGCACACGACAGCAGAGATCCCGCGCCAAAAGTGCCCGATCTGCCACAAAATGATCAACGTGAGAGACATGAAAAATATGCAGAGACACATGAAACTCCACGACGTGACAGAGAAGGAGAAGCAGAAAGAGAAACGGAAGGAGGCGGTCCACTGGTGTCAAGTGTGTCAGATAGGTTTTGCCACCGTGAATACATATCAGCACCACATGAAGTATGCCACAGCACATATACAACCGGATCTACTGAAATTCGAATGTCATGATTGCAGCAAGCGTGCCTTCTCCAAGTCTCGCTTGCGAGATCACATAGAGTCAGCCCACCTGAAGAAAGCGGACTATGTCTGTGATGTTTGCAACAAGGCGTTCACAGTAGGGCGTAACCTGCAGAAACACCGGAAGACAACTCACGCGATCCGACCGACGAGCAGGGATCAAGTGTGCGAGCTGTGCGGGAAAGCATTTCGGGTAAGAGCTGCTTCAGTGTCTCTGCTACCCAAAGGGCCAGAAACACAAAACTCCACACGTAGCATTGTAACAAAAATTacgcattatgaccataatgtgtaa
Protein Sequence: MDNASYHSVIVNKAPTTQNRKDEIKEWLTLTTIQFEEYHTNAELVCLEKWYKPEPVYEADGILKQNGHETETDIKTLSKLSWQHINMNTFHTEFSQDTVKKEVNYESDNDDVNDNVEQHETVSSEIINKHTVNKNTLMVLQNPIAIKIEPIQVKVYSSHKVKDTENVESEKAKNIEPQTAKPDYTIKKLSLDELEKMRQEDRVSWRYARGLHKCETCIISYTNKKAFETHRLTLHSENFSHECKICQQRFNCKDSMENHYQVHFTCFECSECSFRHTRYDLVIKHYTEKHCGSKYQCKECQIVFERRLQMSYHMNTRHKELPRCDVPLCRKTFKTNFWLQNHMKTHTTAEIPRQKCPICHKMINVRDMKNMQRHMKLHDVTEKEKQKEKRKEAVHWCQVCQIGFATVNTYQHHMKYATAHIQPDLLKFECHDCSKRAFSKSRLRDHIESAHLKKADYVCDVCNKAFTVGRNLQKHRKTTHAIRPTSRDQVCELCGKAFRVRAASVSLLPKGPETQNSTRSIVTKITHYDHNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00163749;
90% Identity: iTF_00163749;
80% Identity: -