Agoe039913.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463813.1:20694448-20706830[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.049 13 9.2 2.5 1 23 170 193 170 193 0.97 2 9 0.12 32 8.0 5.2 1 23 199 221 199 221 0.97 3 9 0.00027 0.071 16.3 1.5 1 23 253 276 253 276 0.98 4 9 2.3e-05 0.0059 19.7 1.4 3 23 282 304 281 304 0.93 5 9 0.99 2.6e+02 5.1 4.2 2 23 313 336 312 336 0.88 6 9 0.094 25 8.4 0.4 3 21 355 373 355 378 0.95 7 9 0.0024 0.63 13.4 1.6 1 23 386 409 386 409 0.96 8 9 7.2e-06 0.0019 21.3 0.8 1 23 415 438 415 438 0.98 9 9 0.29 75 6.8 0.0 2 12 448 458 447 461 0.86
Sequence Information
- Coding Sequence
- atgctgaccaaattaattgCGTTCCGACAGCAAGCGATGACTGCACAGCAGACTCTGATGATGTTTGGAAATGTTTTTCAGACAGAAACTGACATCAAGACTTTATCAAAACTATCATGGCAACACATAAACATGAACACGTCCCACACTGAATTCTCGCAAGATACTGTAAAGAAAGAAGTCAATTATGAATCTGATAATGATGACGTTAATGACAATGTTGAACAACATGAGACAGTCAGTTCAGAAATTATTAACAAACACactgtaaataaaaatacattaatgGTTTTGCAAAATCCGATAGCGATTAAAATCGAACCTATACAAGTAAAAGTATATTCATCACATAAAGTAAAAGACACTGAAAATGTTGAATCGGAAAAAGCTAAAAATATAGAACCACAGACTGCGAAACCAGATTATACAATCAAAAAATTGTCTTTGGATGAATTGGAAAAGATGAGGCAAGAAGATCGGGTGTCGTGGAGATATGCGAGGGGTCTTCACAAATGTGAGACTTGCATTATTTCTTACACCAATAAGAAAGCATTCGAAACACATCGCTTAACATTACATTCTGAGAATTTCAGCCACGAGTGTAAGATATGTCAACAAAGATTCAACTGCAAAGACAGCATGGAGAACCACTACCAAGTACATTTCACATGCTTCGAATGTTCAGAGTGTAGCTTCCGCCACACACGATATGACCTCGTGATAAAACACTACACTGAGAAACATTGTGGTAGTAAATACCAGTGTAAAGAGTGTCAAATCGTATTTGAAAGAAGACTGCAAATGTCCTACCACATGAACACACGGCATAAAGAGCTTCCGAGGTGTGACGTTCCACTGTGTAGGAAGACATTCAAGACTAATTTCTGGCTACAAAATCATATGAAAACGCACACGACAGCAGAGATCCCGCGCCAAAAGTGCCCGATCTGCCACAAAATGATCAACGTGAGAGACATGAAAAATATGCAGAGACACATGAAACTCCACGACGTGACAGAGAAGGAGAAGCAGAAAGAGAAACGGAAGGAGGCGGTCCACTGGTGTCAAGTGTGTCAGATAGGTTTTGCCACCGTGAATACATATCAGCACCACATGAAGTATGCCACAGCACATATACAACCGGATCTACTGAAATTCGAATGTCACGATTGCAGCAAGCGCGCCTTCTCCAAGTCTCGCTTGCGAGATCACATAGAGTCAGCCCACCTGAAGAAAGCGGACTATGTCTGTGATGTTTGCAACAAGGCGTTCACAGTAGGGCGTAACCTGCAGAAACACCGGAAGACAACTCACGCGATCCGACCGACGAGCAGGGATCAAGTGTGCGAGCTGTGCGGGAAAGCATTTCGGGTAAGAGCTGCTTCAGTGTCTCTGCTACCCAAAGGGCCAGAAACACAAAACTCCACACGTAGCATTGTAGCAAAAATTacgcattatgaccataatgtgtaa
- Protein Sequence
- MLTKLIAFRQQAMTAQQTLMMFGNVFQTETDIKTLSKLSWQHINMNTSHTEFSQDTVKKEVNYESDNDDVNDNVEQHETVSSEIINKHTVNKNTLMVLQNPIAIKIEPIQVKVYSSHKVKDTENVESEKAKNIEPQTAKPDYTIKKLSLDELEKMRQEDRVSWRYARGLHKCETCIISYTNKKAFETHRLTLHSENFSHECKICQQRFNCKDSMENHYQVHFTCFECSECSFRHTRYDLVIKHYTEKHCGSKYQCKECQIVFERRLQMSYHMNTRHKELPRCDVPLCRKTFKTNFWLQNHMKTHTTAEIPRQKCPICHKMINVRDMKNMQRHMKLHDVTEKEKQKEKRKEAVHWCQVCQIGFATVNTYQHHMKYATAHIQPDLLKFECHDCSKRAFSKSRLRDHIESAHLKKADYVCDVCNKAFTVGRNLQKHRKTTHAIRPTSRDQVCELCGKAFRVRAASVSLLPKGPETQNSTRSIVAKITHYDHNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00163757;
- 90% Identity
- iTF_00163757;
- 80% Identity
- -