Agoe040144.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Argyresthia goedartella
Gene Symbol
-
Assembly
GCA_949825045.1
Location
OX463813.1:23209700-23214860[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.024 6.2 10.2 3.6 1 23 172 195 172 195 0.96
2 16 0.00054 0.14 15.4 1.2 1 23 204 227 204 227 0.97
3 16 0.4 1.1e+02 6.4 1.6 1 23 239 262 239 262 0.96
4 16 0.00024 0.064 16.5 1.8 1 23 271 294 271 294 0.98
5 16 0.00011 0.028 17.6 3.6 1 23 305 328 305 329 0.96
6 16 7.4e-05 0.019 18.1 0.4 2 23 354 376 353 376 0.96
7 16 0.025 6.5 10.2 3.2 2 23 386 408 385 408 0.96
8 16 0.073 19 8.7 0.5 3 19 414 430 413 432 0.88
9 16 0.0001 0.027 17.6 0.5 2 21 438 457 437 460 0.94
10 16 0.034 8.8 9.7 1.5 3 23 471 492 470 492 0.97
11 16 0.00042 0.11 15.7 3.3 1 23 497 520 497 520 0.94
12 16 1 2.7e+02 5.1 4.8 1 23 531 554 531 554 0.92
13 16 0.019 5 10.5 6.7 1 23 581 604 581 605 0.94
14 16 0.0032 0.83 13.0 2.8 2 23 639 660 638 660 0.97
15 16 0.011 2.8 11.3 0.5 1 23 726 748 726 748 0.97
16 16 0.097 25 8.3 2.8 1 23 754 777 754 777 0.97

Sequence Information

Coding Sequence
ATGAAGTGGGCCTTGTTGACCTTGTTGTACACCAGTGTGGACGGAAACACCAACCGCGGGCTCAACCAAGGTCTTCTAAACATTGAAGCTATGGAACAAAGTGCTGAGCGTGTAGACCCAACCTCGTTGTTGCCAGAAGAGCCAATGAACTATGAAcacagaaagaaaaagaagagaAAGAAACACAAACATGTACATGAGGATCCATTCAAAGATATTGATATGGTAACGGAGTCTTTAAAAACAGTGACAGAATATGATTTGGAACCATGTCTTGATCCAGAAGTAACTATTAAGGTGGAGGACATTGATGTTGATTTGGATTGTAATAATTTTGACAGCTATATACCTGAAGGTGATCAAAATGAAGGCAATGATCTATTGTTGCCCATAGCCAGTCAACCAAACCCCAATGTGATACTAACCTTTGAAGAGATAACCAACTCACAATCTGTCAATGTAGAGGACATCAAACAAGAAATTGTCCACAAGGAAGCCAATACGGGATCAAGACACATCTGCAATATATGTCATGTCGTCTTCCAATCTGTCCGAACTCTTCGACTGCATCAGAATAAAAAGCACAAAGCGCACaagaaaatgtttatttactcCTGCGATGACTGTGATATGAAATATGCAATCAAGAGCAGCCTGATGACTCACAGAAAACGGAAACACAGTTCTCATGCTGTCCCAGAAGATGATGTAGTGCACACTTGTGATATCTGTGCGCTAGTCTTCAAAGGTACGTGGCGACTTCGATTGCATAAGCAAAGAAAACATGGAGCGTTTAAAGAGTCTTACAAATACCAATGCCGCGACTGTGGCCTCAGTTATGACAAACGAAGAAGTCTAACAGTACACAGGAACAGGAAACACAATAAGTaccgtaaaaaaaaactacaatggtACCACTGTCCTATTTGCCCAAAGGTTTACAATAACCGAGACACGTATGTCAGACATTTGCAGCGTAAACACCATCAGGAGAAAGATGAGAAAATTCCACCAGAGTTTTTGGAGAATATGTCAGAAATCAATGCATCAGGAGAGATTCCTTGCAAAGAGTGCCCAATGGTGTTCTCAAGTATGATGTACTTAAAACTGCACATGAGGAGAAAGCATAATGCTTACATAGAAGACTTTAGGCTCCATTGCAAGCTGTGCAAGCTGTCGTACGATAAAGTAGAGAGTTTAAAACGACATGTGAGAAGAAAGCATCTAGGCGGGGCGTTTTGTGATGTATGCGGAAAAGTTTTCGAAAACCAAGAAGTTTTTGGTAAACATTCGCACGAAAAACCTATTATTGAGTGCTCAATCTGTGGGCTGATATTTGTATCGCAAGGAGGGCTGCGCAAACACATGCGATGTACCCACAAAATGGAGACATTACCCAAAACTGTATTCTGTACCATTTGCAAAGCTGGGTTCCACGAAAACAGACAGTTGAAGGTACATTTGATGAAAGTCCATTTGAATGTGACCTACACATGTAAGTTTTGCGACAAAACATTCAAATCGAAGGAGTCTTACGGCAAGCATGTGGTAAAATTCCACTCGGGACACTACCCAAAATTGAAAGGGCAACATAACTGCAGTTTTTGTTTGAACCAATTCACGAGTGAACATGAACTATGTAAGCACATAGAAGCAGTCCACAATACTAAAGTTAAAACCGAAAATGTCGAAGTAAAAAATGAAGATGAAGAAACTGAAAAAGATCGCCAGCAGACAACATTCCAGTGCACTAAATGTACAACCACTTGTTCCACATTCGAAGAGCTGAGAAGACATTATGAACTCTACCACCATCTGATAGAAAAAACTCAATGCCAAGTTTGTGGCGAACTAATACCAGTCAATGATTTAGCAAGACACATCAAAACAGCTCACCCTATTGAAGTAGAAAAAACATGCTCATATTGCGACTTCAAGACAAAGTCTAAAGCCAGTCTTACACAACACACACTCCGACACAAAAATGCAACAACATTACAATGTGAATACCCCTGCTGCAGATACAAATCATTCTTCCCACAAGCAATGGAGAAGCACAAGAAGAGACACGAAGAATTAGGAGTCAAAATGCAGTGTGCCCATTGTCCGTTCCAATGTATGAACAAATACATACTAAAGTACCATGAAGAAGTACATAGAACGGGTAAAAAGAAGTACCAGTGCAATCAATGTGAATATTCGACGATTTTGCCAGCTAATTTAGTGCAACATAAGTATAAGCACTCAACAGTGAAACGGTTTAAGTGTGAATATTGCCCCTTCGCCACTAAGTACAATACTTCGTTAAGGTTCCATGTGAGGAAGAAACATTGTGACTTGACTGACCAATCAGGAAATAAACGGGATGAAATCTAG
Protein Sequence
MKWALLTLLYTSVDGNTNRGLNQGLLNIEAMEQSAERVDPTSLLPEEPMNYEHRKKKKRKKHKHVHEDPFKDIDMVTESLKTVTEYDLEPCLDPEVTIKVEDIDVDLDCNNFDSYIPEGDQNEGNDLLLPIASQPNPNVILTFEEITNSQSVNVEDIKQEIVHKEANTGSRHICNICHVVFQSVRTLRLHQNKKHKAHKKMFIYSCDDCDMKYAIKSSLMTHRKRKHSSHAVPEDDVVHTCDICALVFKGTWRLRLHKQRKHGAFKESYKYQCRDCGLSYDKRRSLTVHRNRKHNKYRKKKLQWYHCPICPKVYNNRDTYVRHLQRKHHQEKDEKIPPEFLENMSEINASGEIPCKECPMVFSSMMYLKLHMRRKHNAYIEDFRLHCKLCKLSYDKVESLKRHVRRKHLGGAFCDVCGKVFENQEVFGKHSHEKPIIECSICGLIFVSQGGLRKHMRCTHKMETLPKTVFCTICKAGFHENRQLKVHLMKVHLNVTYTCKFCDKTFKSKESYGKHVVKFHSGHYPKLKGQHNCSFCLNQFTSEHELCKHIEAVHNTKVKTENVEVKNEDEETEKDRQQTTFQCTKCTTTCSTFEELRRHYELYHHLIEKTQCQVCGELIPVNDLARHIKTAHPIEVEKTCSYCDFKTKSKASLTQHTLRHKNATTLQCEYPCCRYKSFFPQAMEKHKKRHEELGVKMQCAHCPFQCMNKYILKYHEEVHRTGKKKYQCNQCEYSTILPANLVQHKYKHSTVKRFKCEYCPFATKYNTSLRFHVRKKHCDLTDQSGNKRDEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00161829;
90% Identity
-
80% Identity
-