Aalb020800.1
Basic Information
- Insect
- Argyresthia albistria
- Gene Symbol
- -
- Assembly
- GCA_963457715.1
- Location
- OY735277.1:2458545-2465800[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.17 9.7 7.4 4.7 1 23 159 182 159 182 0.96 2 18 0.0052 0.3 12.1 0.4 3 23 193 214 191 214 0.96 3 18 0.1 5.9 8.1 0.7 2 23 227 249 226 249 0.96 4 18 0.00016 0.0095 16.9 1.5 1 23 258 281 258 281 0.97 5 18 0.00013 0.0076 17.2 2.6 1 23 292 315 292 315 0.97 6 18 6.2e-05 0.0036 18.2 0.4 2 23 342 364 341 364 0.96 7 18 0.0095 0.55 11.3 3.5 2 23 374 396 373 396 0.96 8 18 0.013 0.77 10.9 0.4 3 19 402 418 401 420 0.94 9 18 0.0002 0.012 16.6 0.4 2 21 426 445 426 448 0.95 10 18 0.0068 0.39 11.8 0.4 3 23 459 480 458 480 0.97 11 18 0.082 4.8 8.4 5.1 1 23 485 509 485 509 0.94 12 18 0.0031 0.18 12.9 2.2 1 23 520 543 520 543 0.93 13 18 0.1 5.8 8.1 6.5 1 23 569 592 569 593 0.94 14 18 7.3 4.2e+02 2.2 1.9 2 23 599 620 598 620 0.77 15 18 0.0044 0.26 12.4 3.3 2 23 627 648 626 648 0.97 16 18 7.2 4.2e+02 2.3 2.1 2 23 655 678 654 678 0.94 17 18 0.0016 0.091 13.8 0.5 1 23 714 736 714 736 0.97 18 18 0.084 4.9 8.3 2.8 1 23 742 765 742 765 0.97
Sequence Information
- Coding Sequence
- ATGCAAAGTGTAAACAAGAGGTACATTCTAAATACTGCAACTATGGAACAAACTGCTGAGCGTATAGACCCAACCTCCTTGTTACCAGAAGAACCAATGAACTATGAACACAGGAAGAAAAAGAAGAGGAAGAAGCATAAACATGTCCATGAGGATCCATTCAAAGATATTGAAATGGTAACAACGGAGTCTTTAAAAACTGTGACTGAATATGATTTGGAACCAAATCTTGATCCAGAAGTATCTATAAAGGTGGAGGACATAGATAATGATTTGGATTGTGACAATTTTATGGAATACAGCTTTATACCTGAAGATGATCAAATTGAAGACAATGATCTATTGGTGCCCATAGCCAGTCAAACAAACCCAAATGTGGTTCTAACCTTTGAAAATATCAACAACTCACAGACAGTCAAAAAAGAGGATATCAAACAAGAAATAGATAACACAAAAGCCAATGAGGGATCAGGACATGTCTGCAATTTATGTAATTACATCTTTCATTCTGTCAGAACGCTGCAACTGCATCAGACTAAAAAGCACAAATTGCAAAAGAAAGCATTTATTTACGGCTGCAATGACTGCGATATGAAATATGCAATCAAGAGCAGCCTGGCGACTCACTGGAAAAGAAAACACAGTCACCATGCGGTCAAGAAAGATGAAGAAGTACAGACTTGTGATATATGCGCGCTGGTCTTCAAGGGTAAGTGGCGTCTTCGATTGCATAAGCAAAGAAAACATGACGCGTACAAAGAGTCTTACAAGTTCAAATGCAAGGACTGCGACCTCAGTTATGAAAATCGAAGAAGCCTAATAGTACACAGATCAAGGAAACACAGCAAGACACGGAAAAAGAAACTACAGTGGTACCACTGCTCTATCTGCCCGAAGGTTTATAATAACCGAGACACATATGTCAGACATTTGCAGCGGAAACATCAGAAGCAGCAGAAAAATGAAGAAATACCGCCAGAGTTTCTGGAGAATATGTCTGAAATCAACGCGTCAGGAGAGATCCCATGCAAAGAGTGCCCAATGGTATTCTCAAGTATGATGTACTTGAAAATGCATATGAGGAGGAAGCATAACGCGTACATTGAAGACTTTAGGCTCCATTGTAAGTTGTGCAAGCTGTCGTATGACAAATTAGAGAGTTTAAAACGACATGTTAGAAGAAAGCATCTAAGCGGGGTGTTCTGTGATGTATGCGGAAAAGTTTTCGAAAGCCAAGAAGCGTTTGGTAAACATTCGCACGAGAAACCTATTAATGAGTGCGAAGTGTGCGGGTTAATATTCGTGTCGCAAGGAGGGCTGCGCAAGCACATGCGGTGCATCCACAAAATGGAAACAGTACCCAATACTGTATTCTGCACCATATGCAAAGCTGGGTTCTATGAAAACAGACAGTTGAAGGTACATTTGATGAAAGTCCATTTAAACGTAACCTACACATGTAAGTTTTGTGAACACAAAACTTTTAAATCAAAAGAGTCCTACCGCAAGCATGTGGTAAGGTTGCACTCGGGAAAATACCCGAAACTCAATGGACAACATGACTGCGATGTTTGTTCAGAACAATTTGCAACCGAACATGAACTCTGTAAACATATACAGGCAGCCCATAATGATGATATTAAAACCGAAAAGGTCGAAGTAAAAACCGAAGACGAAGAAACGGAAAAAAACTACCAACAAACATTCCAGTGCACTAAATGTACAAGCTCTTGTTCCACATTCGAAGAGCTGAGAAGGCATTATGAACAAAACCACCATCAGGTAGAAAAAACCCAATGCCAAGTATGTGGTGAACTAATACCAGTCAATGAGTTACAAAAACACATGAAATCAGTTCACCCTGTCGAAGTAGAAAAAAAATGCTCATATTGTGACTTTAAGACCAAGTCCAAAGTCAGTCTTACACAACACACACTCAGACACAAAAATGCAACCTCATTACAATGCGAGTACCCTCACTGCAGATACAATTCCTACTTTCCACAAGCAATGGAGAAGCATAAGAAAAGACACGAAGAGCTAGGAGTCAAAATGCAGTGTGCACACTGTTCGTTCCAATGTATGAACAAATACATACTGAAATACCATGAAGAGGCACACACAACGGGTAAAAAGAAGTACCAGTGCAATCAATGCGACTATTCAACGATTTTACCAGCGAATTTAATTCAACATAAATATAAGCATGCGACAGTGAAGCGGTTTAAGTGTGAATATTGTCCCTTCGCCACTAAGTACAATACGTCTTTAAGGTTCCATGTGAGGAAGAAACATTGTGATCTGACCGAAGAATCAGGCAATAAAGGGGTTGAAACATAA
- Protein Sequence
- MQSVNKRYILNTATMEQTAERIDPTSLLPEEPMNYEHRKKKKRKKHKHVHEDPFKDIEMVTTESLKTVTEYDLEPNLDPEVSIKVEDIDNDLDCDNFMEYSFIPEDDQIEDNDLLVPIASQTNPNVVLTFENINNSQTVKKEDIKQEIDNTKANEGSGHVCNLCNYIFHSVRTLQLHQTKKHKLQKKAFIYGCNDCDMKYAIKSSLATHWKRKHSHHAVKKDEEVQTCDICALVFKGKWRLRLHKQRKHDAYKESYKFKCKDCDLSYENRRSLIVHRSRKHSKTRKKKLQWYHCSICPKVYNNRDTYVRHLQRKHQKQQKNEEIPPEFLENMSEINASGEIPCKECPMVFSSMMYLKMHMRRKHNAYIEDFRLHCKLCKLSYDKLESLKRHVRRKHLSGVFCDVCGKVFESQEAFGKHSHEKPINECEVCGLIFVSQGGLRKHMRCIHKMETVPNTVFCTICKAGFYENRQLKVHLMKVHLNVTYTCKFCEHKTFKSKESYRKHVVRLHSGKYPKLNGQHDCDVCSEQFATEHELCKHIQAAHNDDIKTEKVEVKTEDEETEKNYQQTFQCTKCTSSCSTFEELRRHYEQNHHQVEKTQCQVCGELIPVNELQKHMKSVHPVEVEKKCSYCDFKTKSKVSLTQHTLRHKNATSLQCEYPHCRYNSYFPQAMEKHKKRHEELGVKMQCAHCSFQCMNKYILKYHEEAHTTGKKKYQCNQCDYSTILPANLIQHKYKHATVKRFKCEYCPFATKYNTSLRFHVRKKHCDLTEESGNKGVET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00163597;
- 90% Identity
- -
- 80% Identity
- -