Agoe065645.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949825045.1
- Location
- OX463820.1:4539864-4560354[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-72 5.1e-67 229.1 27.5 1 270 121 389 121 413 0.87 2 2 0.23 3e+04 -3.2 9.0 119 170 424 475 409 487 0.60
Sequence Information
- Coding Sequence
- ATGGGTCGGCGATCCAAACTTGTGACATCAGACAACAGCGAGGAGGAGAGCGGCGACGCCTTCACCGACGGAGACTTCGGAGACTCGGATGAAGAGGTCACCGTTATCGAGACTCCTGGAGTACCTGGAGGCTCCAAGTCAAGCGTGCCGGTCAACGAAATAGTCAACACCGGAATCAAACATAGCAATGAAACTAACGGAATAGCACACAATAGCCTTAGCAGGCAAAGCTGCCTAAACAGACTGAAAATCGGTGATGCAAATGGActgaacaaaaacaataaaggCGAAAATGGAATCTCTGATAATGGCGATATAAGCCCTTCGATCGTCGGGATCATTGGCGATCAACACGATCATGCGGAGCAGCGACTGGCGGCGCGGCGCGCGGCGCGGGCGGAGGCGCGCGATATACGCATGCGCGAGCTCGAGCGCCAGCAACGGGAGCAGGAGAACCATGCAGATAAAGCGTACGACATGTACGCGGGGAAGGAGATACAAACAGTGGCAACGCGTCGCGGCGGCGGGCGGCTGGCTGCTCTCAGTCCGGGCGGGCTGCAATCAACGCGACGCAGCTCCGAGGACTCTCAGGATGAGCCCTTCAGCCTCAAGGATCTTAGGTACGACCTGAAAGAAGTGCAGGAGAAGTTCCGCAAGGCGATGATCCTCAACGCGCAGCTCGACAACGACAAGGCGGCGCTGGCGTACCAGAAGGAGCTGCTGCAGGACCGTCTCGAGGAGCTGGCAGAGGAGCACGCGCAGCTGCAGCGCGAACACCGCGAGAAGAGCTCCGCGCACGAGCGTTTAAAGCGGGAGCACGCCGCCCTGGAGCGTGAGCTGTGCGCGGCGCGGGATGCCGTGCGCGCGCGGGATgctgctgccgctgccgccggcCGCGCCTTCGTGGACGCGTCGACAACTGCGGCACCCGAGCTGGCGGCCGCCGGGTTCGGCAGCGTGCCGCCGCTGGCGCTGGTGTCACTCGAGAGCGAGAAGCTGCTGGAGGACGCGGGGGAAGGGACGTTGGACGTGCGATTACAGCGGCTGCTCGCATCGAAGCTGTCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGACGATGAACGAGGAGCGCGCGGCGCGGCAGAACGGAGTCGCCAGCCACCACGACGCCGAGTACGAGAGCGAGCTCGAAGCAGTCCGCAAGTCCGCCGCGGAAGCCAAGGCACGCGCTGCCCGCGCCGAGGCGGAGGCGGCGCTGCAGGGCGCCGGCGTGGCGCGACTGGAGGCGCAGGTGGCGCGGCTGAAGGCGCGGCAGGGCGAGCACGAGGCGGAGCAGGAGGCGCTGAAGCAGGACCGCCGGAAGATGCAGAGAGAGCACCGGGAAGCACTGAACCGCGCGGAGGAGTTGGAGACAGAGAACAGCCACCTCACCAAGCGGCTCGACAAACTGAAGAACGCCAAGTCGGCGCTGCTGAAGGAGCTGTGA
- Protein Sequence
- MGRRSKLVTSDNSEEESGDAFTDGDFGDSDEEVTVIETPGVPGGSKSSVPVNEIVNTGIKHSNETNGIAHNSLSRQSCLNRLKIGDANGLNKNNKGENGISDNGDISPSIVGIIGDQHDHAEQRLAARRAARAEARDIRMRELERQQREQENHADKAYDMYAGKEIQTVATRRGGGRLAALSPGGLQSTRRSSEDSQDEPFSLKDLRYDLKEVQEKFRKAMILNAQLDNDKAALAYQKELLQDRLEELAEEHAQLQREHREKSSAHERLKREHAALERELCAARDAVRARDAAAAAAGRAFVDASTTAAPELAAAGFGSVPPLALVSLESEKLLEDAGEGTLDVRLQRLLASKLSLESEVRKLKLTMNEERAARQNGVASHHDAEYESELEAVRKSAAEAKARAARAEAEAALQGAGVARLEAQVARLKARQGEHEAEQEALKQDRRKMQREHREALNRAEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -