Agoe086802.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463826.1:2784261-2784836[+]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-08 6.7e-05 25.6 0.4 24 65 9 50 4 114 0.85
Sequence Information
- Coding Sequence
- atggaaaccacaCCTGCAGAAGCCGCTCAAATCGTCATCCTAATCCAGCAAGGGTTGTCTCAGCGTACCATCGCTCGACAGCTTCATCTTAGTCAGTCTTGTGTCTCGAATGTATATAAAAGGTTCCGGGAGACTGGAAACTTTGTCCGGAGACCAGGATCTGGACGACAGCGTTGCACTTCGGTGAGAGGTGACCGATTTATTGTCACCACATCTCTCCAAAATCGACACTTAACCGGCGTCGATGTTCAACGGCAGCTCAGAGATGTTCGAGAAAAGATTGTTAGCGAGTGGACGGTAAGGCGAAGACTCAAAGAAGCGAATTTGACCCCAAGAAGGCCAGCCACGGGGCCCAAATTGTCTCCAAGGCACCGACAAGCCCGGCTTCAATTTTCTCGCGATCACTTAGATTGGGATACAGAGCAATGGAGCCGAGTCCTGTTCTCGGACGAAACAAGGATGTGCCTGTATGGTCGCGACCGTCGACAGAGAGTCTATAGGAGACCGGGGGAGCAATTTGCACAATGCTGTTTTTCGGAAACAGTTGCATACGGGGGCGGGTCCTGTATGATATGA
- Protein Sequence
- METTPAEAAQIVILIQQGLSQRTIARQLHLSQSCVSNVYKRFRETGNFVRRPGSGRQRCTSVRGDRFIVTTSLQNRHLTGVDVQRQLRDVREKIVSEWTVRRRLKEANLTPRRPATGPKLSPRHRQARLQFSRDHLDWDTEQWSRVLFSDETRMCLYGRDRRQRVYRRPGEQFAQCCFSETVAYGGGSCMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00162757; iTF_00162776; iTF_00162783; iTF_00682386; iTF_00682385; iTF_00162739; iTF_00162751; iTF_01441059; iTF_01441022; iTF_00698251; iTF_00162765; iTF_00698255; iTF_00701953; iTF_00701954; iTF_00701955; iTF_00698254; iTF_01438899; iTF_00701942; iTF_00701943; iTF_00701944; iTF_00701945; iTF_00701946; iTF_00701947; iTF_00701948; iTF_00701949; iTF_00406718; iTF_00701951; iTF_00701952; iTF_00698253; iTF_00698250; iTF_00406716; iTF_01438898; iTF_00698264; iTF_00406715;
- 90% Identity
- iTF_00162750;
- 80% Identity
- -