Aalb023112.1
Basic Information
- Insect
- Argyresthia albistria
- Gene Symbol
- -
- Assembly
- GCA_963457715.1
- Location
- OY735281.1:6426428-6430675[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.23 3e+03 -1.0 0.0 21 44 239 262 236 266 0.82 2 7 0.0086 1.1e+02 3.5 0.0 18 45 263 290 249 297 0.79 3 7 0.015 2e+02 2.8 0.0 21 51 294 324 290 326 0.86 4 7 0.014 1.8e+02 2.9 0.0 21 44 322 345 320 349 0.89 5 7 0.00032 4.2 8.1 0.0 21 45 350 374 344 382 0.89 6 7 0.0046 61 4.4 0.2 18 43 403 428 393 433 0.79 7 7 1.8e-06 0.023 15.3 0.0 21 45 434 458 417 463 0.87
Sequence Information
- Coding Sequence
- ATGGAGTATTCCATCAAAACTGAGGATAGCAAGCAAGAAGTGGTGTACCAACTGCTGTGTATGGGCTGTCTGTGCGGCGGACGGACCACCAAGACTCTCACCGACCCGGCGCTGTTGAAGTATTACGAGGATATCCTGAGGGGTGTCCAGGTCTCGTTGTCTGGTGTCCCGGCTCCGCGGCTCTGTTGGGAGTGCGAGGCTCTGCTGAAGAGAGCGTTCCACTTCACTCGGCAAGTGCAGGAGTGCTTCGTGATACTGCAGCCGAGTCTACTCAACATGGGCACTAAGGAGTCACCATCATCCTTACTAGCACAACAACTGACCCGCTCGCCCCGCCTCACCCCCTGTCCACTGGCGCCGGTCGACCTCGCGCCGGACAATGGGCTTGCCCCTGGTGACTCGCGCGATGAGTTCGAGCCGCTGCTGGCACGGGTGATGGTGGAGATTGAGGAAGATGAAGATAGGAAGGTGGACCTGGCTTGTGGTGATGCGGTTGGAGAAATAGAAGCTGGGGAGCCAACATCAGAAATAGAAGACGAAACAATCAACAGGCAGACTCACATGATCAGAGACCCAGTAGTAACAACCTCAGAGGGTAAAGAAAAAAATTGGATCGATATTAATGGCgtcgaaacgaaacgatttcAGTGTGGTGTGTGCTCGAAACGATTCTTATATAACAGCGACCTTAAATATCACATGATGAGTCACACAGGCGAGAAACCATTTCTGTGCATGATGTGCGATAAAAGATTCAGCCAAAACGGAAAGTTGAAAATTCACATGAGAACTcatactggcgagaagctaATGTGCCCGGTGTGCCAAAAAGGATACAACCAAACAAGCGATTTGAAAGTTCACATGAGGACCCATACAGGCGAAAAACCATATCCCTGTACAACGTGCGATAAAGCATTTAAGAAAAGTGGAGACTTGAAAATTCATATGAGAATACATACCGGGGAGAAACCTTATAAGTGTTCGGTGTGTCAGAAAGGTTTCAACCAAAGTGGTGAGTTGACTATTCACATGAGGACTCACACGGGAGAGAAACCATACAAGTGTACGTTATGCGAAAAAGTATATAACCAAAGTGGGAAGTTGAAAAATCACATGAGAACTCATACTGGGGAACGGCCGTATAAGTGTAAAGAGTGCGGGAAAGGTTTCAATCAAAACGGTGAGTTGAAAATTCATATGAGACGTCATACAGGCGAGAAACCCTATAAGTGCCCAGTGTGTCAGAAAGGTTGCACACACGGGAGTGAGCTGAAAGTGCACATGAGGACTCACACGGGGGAAAAGCCTTTTCGGTGTCCAGTGTGTCCAGCAGGATTTAACCAAAGTGGCAATTTGAAGAGTCATATGAAGACACATGCAGCAGATAGGGAACGAACTTCGAGCCTCTTTGTGTTACCTGAAATTGAAAAACCCTAA
- Protein Sequence
- MEYSIKTEDSKQEVVYQLLCMGCLCGGRTTKTLTDPALLKYYEDILRGVQVSLSGVPAPRLCWECEALLKRAFHFTRQVQECFVILQPSLLNMGTKESPSSLLAQQLTRSPRLTPCPLAPVDLAPDNGLAPGDSRDEFEPLLARVMVEIEEDEDRKVDLACGDAVGEIEAGEPTSEIEDETINRQTHMIRDPVVTTSEGKEKNWIDINGVETKRFQCGVCSKRFLYNSDLKYHMMSHTGEKPFLCMMCDKRFSQNGKLKIHMRTHTGEKLMCPVCQKGYNQTSDLKVHMRTHTGEKPYPCTTCDKAFKKSGDLKIHMRIHTGEKPYKCSVCQKGFNQSGELTIHMRTHTGEKPYKCTLCEKVYNQSGKLKNHMRTHTGERPYKCKECGKGFNQNGELKIHMRRHTGEKPYKCPVCQKGCTHGSELKVHMRTHTGEKPFRCPVCPAGFNQSGNLKSHMKTHAADRERTSSLFVLPEIEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00161760;
- 90% Identity
- iTF_00161760;
- 80% Identity
- iTF_00161760;