Aalb006671.1
Basic Information
- Insect
- Argyresthia albistria
- Gene Symbol
- -
- Assembly
- GCA_963457715.1
- Location
- OY735257.1:1181784-1189264[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.2 5.1e+03 -3.0 0.0 58 72 61 75 30 88 0.55 2 2 3e-20 8e-16 58.7 11.0 1 52 118 169 118 180 0.90
Sequence Information
- Coding Sequence
- ATGGGTCGGCGATCCAAACTTGTGACGTCAGACAACAGCGAGGAGGAGAGCGGCGACGCCTTCACCGACGGAGACTTCGGAGACTCTGATGAAGAGGTAACCGTCATCGAGACTGCCGGAGGCTCCAAGTCCAGCGTACCGGTCAACGAAACAGTCAACACCggggttaaaaataacaaagaAACCAATGGGATAGCACACAATAGTCTTAGCAGGCAAAGCAGCCTAAACAGACTGAAAAACGGTGATGCAAATGGACTGAACAATAACAATGAAGGTGAAAATGGAATTTCGGATAATGGCGATATAAACCCTTCGATCGTCGGGATCATTGGCAATCAACATGGTCATGCGGAGCAGCGgctggcggcgcggcgcgcggcgcgggcgGAGGCGCGCGAGATACGCATGCGCGAGCTCGAGCGGCAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCGTATGACATGTACGCCGGCAAGGAGATACGTGAGTCGCGCACCTTTCTGCAACTATTTGCTATCATAAGAGAGCTGATGCTGATGAGGGGGGTAAGCAAGTAA
- Protein Sequence
- MGRRSKLVTSDNSEEESGDAFTDGDFGDSDEEVTVIETAGGSKSSVPVNETVNTGVKNNKETNGIAHNSLSRQSSLNRLKNGDANGLNNNNEGENGISDNGDINPSIVGIIGNQHGHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKEIRESRTFLQLFAIIRELMLMRGVSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -