Abis008435.1
Basic Information
- Insect
- Argynnis bischoffii
- Gene Symbol
- -
- Assembly
- GCA_033884665.1
- Location
- CM066617.1:5587582-5596671[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.19 16 6.8 0.4 3 23 130 150 128 150 0.96 2 15 0.0019 0.16 13.2 2.8 1 23 261 283 261 283 0.99 3 15 0.00023 0.02 16.0 1.3 1 23 289 312 289 312 0.96 4 15 0.033 2.8 9.2 4.7 1 23 317 340 317 340 0.94 5 15 1.7e-05 0.0015 19.6 0.4 2 23 507 528 506 528 0.97 6 15 0.00071 0.06 14.5 2.1 1 23 534 556 534 556 0.98 7 15 0.71 60 5.0 8.1 1 23 622 644 622 644 0.97 8 15 0.78 66 4.9 0.0 1 23 651 673 651 673 0.96 9 15 0.0011 0.09 13.9 1.9 1 23 679 701 679 701 0.95 10 15 0.00027 0.023 15.8 1.9 1 23 707 729 707 729 0.96 11 15 0.00078 0.066 14.4 2.9 1 23 738 760 738 760 0.99 12 15 0.00013 0.011 16.8 0.6 2 23 807 828 807 828 0.97 13 15 0.032 2.7 9.3 5.9 1 23 845 867 845 867 0.95 14 15 2.6e-06 0.00022 22.2 0.7 1 23 873 895 873 895 0.98 15 15 5.5e-07 4.6e-05 24.3 3.1 1 23 901 924 901 924 0.98
Sequence Information
- Coding Sequence
- atgaataataatgtgTCTCCTGAAGTTGATCCTTTGAGTTCATATAACTTAAGTACATTTCACAATTTTGAAAGTTATGATAATCTTCAATATGGAGACCATGGTGTGTTCCCATATCCTGTTAAACTAGAGCAATACCAAAATgcctttaattattataataatccaAATGCGAGTGCTGCGAAAAGTCCACAAGGAAATACTAAAAATGATAATgaaccaaacaaagaaacagaGTCTAAAGTTGTAAATAATGTTGAAAACAAAACTCAAAATGTGGTAGATGTCAAACCAGATATAACGAAAGTGGGGAAgcaaaagataaaaaaggagagaagtaaatatttttctgaaaaGATAACGGAAAAAGATTTTCCCTTTTATGGTTGTTCACTATGCAATGTATCGTATCAAAACTTACACGAGTTGGATACGCATGTGCTGATTCATAAAGAGAGAGTGACGAGTTACGACTtgagaataaaaaatcaaatgaagaagagaaaattaaaaaaagaaatgaaaaaaaataaaaaattaaaaaaaacaatcaaagttGAAAATCAAATTGAAGTTGAAATAAAACCAGAAGATGGATATATAGGCAACGAGAAAGCTTCAGATTTTATGAACAATACAGAATCGGATAACCAAAGTTCTAAAGAAAATAACGGCAACACTAAAACtagtaatcaattaaaaataattgcagATAAAACTAATCAAATAATAGCAAAAAGTTCAACAGAAAACACAAAAGATGAAGAGTTacagaaaatttataaatgtttcgCGTGTCAGAAGCAGTTCACACTAAGTTACTATTTGAAACTTCATGTCAGATCTCATACAGATGAAAAGCCATACACTTGTTCTTCATGCGGGCAGTCATTCATAACAGCAAGTAAATTGGGCCGGCACAATAAAAGATTTCATTTAGCAATAAGATATCAGTGTAGAATATGCTATAGATATTTTTCTAGATTTGAATTCCTGACGCGCCATTTTGATAAAAAACATCCAGATGACAAACTAGAAGGAGAACCATATGATTACAATGCAATATTGCCATATTTAAAAGAGCTAGAAGAGCAGATGCGGGAGAAGAATGAAAATGAGAAGGAGAAACCTAAAAAAGAAGATGTATGGGCCGAATGTGATGTGgtttcaaaagaaaatatagttaaaGAAGAAGAAAACATCAATAAGTTTACAATAGAAATAGAAGAAGTTAAAGTTGATATGGATATAGAAGTTAAACAAGAAGAGGTGGAAGATGATAGAAATGATGATTTTAGTGGTGATTGTGATGGTGTTGGTGGTGATAATGATGTGAGTGATGATGTTAGGTGTGATGATGGTAGGAGTGATGAAGTGAAGGCTGATGATGTTAAAGAAGAGGATGATGCAATGAAGGATGAAATaGCATCCGACGACGACTATTTCCCATCGAACACGTGGGCTGCCACACCCAAAATCGAACCCCCACCATCGCCCAAAACAAAGCAAGATAGACTAAAATGCCCAATATGCGAGAAGAAAGTGAGCACAGTTTCATACATGAGAGTTCACATGCGAACTCACACCGGGGAAAAACCGTTCAAATGCTATATATGCAATGCTGGGTTCATTACAAGCAGTAAAATGCACAGACATGTTCTCACTCATCCCGAATCTTGGAAtgagGATGGAATAAAACCGGAAAAAGAAGATATTAAATCGGAAACGGAAAAAGATGACGACGACGATGATGaagataataaagataaaaaagcaataaaaaaaatgaagaaggCACTAGCGAAGTTCTCAAAGAAACCAAGTGATTtggagaaaaagaaaaagttgtATCAAAAACGGCCGCATTCTTGTGAATTTTGTCACAAACGCTTCTTACATTTAGAAACGTTACAGGTACACAAAAAGAGTCATGAAGGAGAAGAAAGAGTGTACAAATGCAACTTCTGCCTTGTAGAAGTAGAAGATGAGGCGGCACTGAAGTCCCACGAAGTGACTCACGAGGGACCAAAGCCCTACCTGTGCACTGTGTGTGGGAAGAGCTATAAGAAGAGAGAAACTATGaTCTACCACAGAAAAAATCATAAGCCCGAAAAGGAGTTCATATGCGACATTTGCACGAAATCCTTCAACGCTCAATGCAAATTACAAAGGCACATCGTCAGCCATCGAGTGGACAAGTTCATACTGAGATACGAGTGTCCTGTGTGCGCTCACATGTTCAATACTAAATATCATGTGCAAATGCACCTCTCGACACACCAGAAGGAGGGATTAATACAAGAAGAAAATCGCAATGAAATATTAGCAATGGTGTTACAAAACGCTCGCAAAATACCTAAAAAGCCTGACACCTCGTCTTCCCTCACCGACATAGTACCGACGGACGAGAGAAGCCGCGTGTGTAACATATGCGGTGAAGTCTTCCAACATTTCTATTATTTAGAAGAACATTTAAAAAGCCACGGATCAAAAATAGCAATTGAAGACAGCGAGAAGATAGAAGagaaaaaacatatatgtaaaatatgcaataaaggtttcaaattacattattatttgaaattacatAGTTTCACACACACCAAGGAGAAACCGTTCATATGCCAACAGTGTGGTAAGGGCTTTATAACGCGCGGGAAATTAAAAAGACATTTAGAAACTCATACAGGGTTGAAGAAATATCAATGTCATATTTGCTATAAATTCTTCACCAGACCTAGTTATTTGAGGATACATGTTAGAACTATCCATGGGACGCAGGATTACAATTTTAGATTGGAGAAAAATTATGGGTTTTCTATACCCGTAATGCAGGATGGGTGA
- Protein Sequence
- MNNNVSPEVDPLSSYNLSTFHNFESYDNLQYGDHGVFPYPVKLEQYQNAFNYYNNPNASAAKSPQGNTKNDNEPNKETESKVVNNVENKTQNVVDVKPDITKVGKQKIKKERSKYFSEKITEKDFPFYGCSLCNVSYQNLHELDTHVLIHKERVTSYDLRIKNQMKKRKLKKEMKKNKKLKKTIKVENQIEVEIKPEDGYIGNEKASDFMNNTESDNQSSKENNGNTKTSNQLKIIADKTNQIIAKSSTENTKDEELQKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCSSCGQSFITASKLGRHNKRFHLAIRYQCRICYRYFSRFEFLTRHFDKKHPDDKLEGEPYDYNAILPYLKELEEQMREKNENEKEKPKKEDVWAECDVVSKENIVKEEENINKFTIEIEEVKVDMDIEVKQEEVEDDRNDDFSGDCDGVGGDNDVSDDVRCDDGRSDEVKADDVKEEDDAMKDEIASDDDYFPSNTWAATPKIEPPPSPKTKQDRLKCPICEKKVSTVSYMRVHMRTHTGEKPFKCYICNAGFITSSKMHRHVLTHPESWNEDGIKPEKEDIKSETEKDDDDDDEDNKDKKAIKKMKKALAKFSKKPSDLEKKKKLYQKRPHSCEFCHKRFLHLETLQVHKKSHEGEERVYKCNFCLVEVEDEAALKSHEVTHEGPKPYLCTVCGKSYKKRETMIYHRKNHKPEKEFICDICTKSFNAQCKLQRHIVSHRVDKFILRYECPVCAHMFNTKYHVQMHLSTHQKEGLIQEENRNEILAMVLQNARKIPKKPDTSSSLTDIVPTDERSRVCNICGEVFQHFYYLEEHLKSHGSKIAIEDSEKIEEKKHICKICNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRLEKNYGFSIPVMQDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00212804;
- 90% Identity
- iTF_00212804;
- 80% Identity
- -