Abis008047.2
Basic Information
- Insect
- Argynnis bischoffii
- Gene Symbol
- -
- Assembly
- GCA_033884665.1
- Location
- CM066617.1:974819-985714[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0089 0.75 11.0 3.4 1 23 240 263 240 263 0.94 2 24 0.13 11 7.4 0.0 2 23 289 311 288 311 0.93 3 24 0.00026 0.022 15.9 0.8 1 23 332 354 332 354 0.98 4 24 0.12 10 7.4 1.0 1 19 358 376 358 380 0.78 5 24 0.12 11 7.4 0.6 1 23 384 407 384 407 0.92 6 24 2.8 2.3e+02 3.2 5.1 2 23 414 436 413 436 0.96 7 24 0.0045 0.38 12.0 0.4 3 23 445 466 443 466 0.93 8 24 0.00034 0.029 15.5 3.2 1 23 472 494 472 494 0.97 9 24 0.02 1.7 9.9 1.7 1 23 540 562 540 562 0.96 10 24 0.12 9.9 7.5 0.0 2 23 591 613 590 613 0.94 11 24 0.11 8.9 7.7 0.3 2 23 634 656 633 656 0.93 12 24 0.00084 0.071 14.2 2.1 2 23 662 684 661 684 0.95 13 24 0.0042 0.36 12.0 0.9 1 23 689 712 689 712 0.93 14 24 0.16 13 7.1 0.5 2 23 715 737 714 737 0.95 15 24 0.009 0.76 11.0 1.6 2 22 744 764 743 764 0.94 16 24 0.0051 0.43 11.8 0.4 1 23 822 845 822 845 0.92 17 24 0.2 17 6.7 0.1 3 23 874 895 872 895 0.94 18 24 0.13 11 7.4 0.3 3 23 919 941 917 941 0.95 19 24 0.00076 0.065 14.4 0.6 3 20 948 965 946 969 0.90 20 24 0.012 1 10.6 0.4 1 23 974 997 974 997 0.97 21 24 0.00051 0.043 14.9 0.2 2 23 1003 1025 1003 1025 0.94 22 24 5.7e-05 0.0048 17.9 4.7 1 23 1029 1052 1029 1052 0.97 23 24 0.00024 0.021 16.0 0.6 2 23 1059 1080 1058 1080 0.96 24 24 0.0017 0.14 13.3 2.1 1 23 1086 1108 1086 1108 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTTGATGAAATAATCGTGAAAGAGAGCCCGGGCCTCTGCCGGTGCTGTCTTTCTGAGGGTTGTTACAAGGACTTGGGTACGGAGTACGTTTGGATGGATGAAACTGAGGTGTACGCCGATATGTTGTTAGAATGCTTCGATATTAGTATATCCCAACATATAGAAGGGCCAAATGGTCCAAGCCGGTTAATCTGTGAAGTTTGCATCACTCGTTTACGAGATGCCTGTAACTTTAAGAAGCAAGTACTTGAATCTGAAAAGAAGTTTATTGACATGCTTGGAAGAGGAGAGTTTAAAACAAAAGtaATAGTATACCAAGAGCAAATGAAATCTGAAGACAATATTGATGCTCAGGCCACAGGGGAAGCCGAAGTCGAGTTTCTAGAGGAAGACATTGATTACGATGACGGCCCAAATAACGATGTATCAGAGCCGACAGTATCTGAGGATATAACAGTAGCAACGTTACCAATAAAAGGCAAAAGGGGAAGACCCCGAAAGAATGCAGTGAAGCCGGAgaagaaaaaatctaaaattgagGATAAACCGAAAACTAAAGTAGTTAGAGgtgAAAAACGCCCAGAGATGGCACCCGAGGCAGTGAGTAAGTCCTCTATGTCTGCGACGAAAAGAAATCGTCTCACGAAAAGAAATGCTATAATCATTCTCGAAACTTCTACAGTCGTACCGTTTAAGTGGCATAGACACAACTACCTTTGCTTCTTCTGCCACAGAACTTTTAAAACCCTAGAGCCCTTAAAGGAGCATACTAGAAACGATCATAAGGACTCTAGCATAAAATCAGCCGTGTCCTACCTAAAAAGGGACGAAAAAGTCAAAATTGACGTTTCCCAAACAGTATGTCGCATTTGCGATGAAAATTTCGACGATGTTAACACGTTTGTTGCTCACGTGGAGTCGATTCATGAGAGGGTTTTCGCAGATTGCGGTTACGGTGTGATTCCATACAAATTGCAGgatgataaatataaatgcgCCATATGTGGGAAGGATTTTCAATACTTCATTAAACTCAATCAGCACATGAATGAGCATTTTGGTCACTACGTGTGCGAATTGTGTGGGAAATCGTTTTTGAGTCAGGATAGGTTGCGATGCCATGCGGTCAGTCATGGTTCACATTTCAAATGCAATTTTTGTTCGGAAATCTTCGATTCTCTCACACAAAAGAATAACCACGAAATGGCCGCTCATAACAAAAAGCCAACAATTAAATGCTTCTTCTGTCCGGAAACCTTCCAAAATTACATAACGCGTAAACGACACCACCACACCGCCCATAATTTGGACATTTCACTCATAAATTGTCCGGTTTGCGGGAAAACTTTCCATATTTTGAGTAAAATGTCCGCTCATTTGAAGGAAGTTCATGTGAGGGAAAAGAATTTTGCATGCTCCATATGTGATCAGAAGTTCTTCTCGCGCACCCACGTTCAAAAGCATATGATCAAACATGTAGTTGAGGATTTCTTTTCAGATATAAAACCTCGGAAAATGAAAGGCTGCGAATCTTCTTCGATGCGTAGAAGGAAAAACCTTCAGCTACTCTTCAATAACACAACAGTCATACCGTTTAAATGGAGAGGAAAATATCTATGTTTCTATTGTAGCAAAGACATATCGGAGTATTCCGAACTCAGAAAACATACGAAGTCTCATGGTGATTGTTCTACAAAAGACCATTCCTTAAAAGTTTTAAAGGGTGGACAGaatatggaaataaaaatcgatatttcAGAAATTACTTGTGAGATTTGTAACGAAGAATTTCCCGTTTTTGATGATGTTTTGTCACATTTATTGGTCAAACATAAGTTGGAGTTTGATAGGGAAGTAGATATGGCTATAGAAGAGTATCGGCTGGTCGATCTAAGTTGCCTTCTATGCGAGGAAAAGTTCACGTATTTCGGTTATTTAGTGTCGCACGTAAATAATAACCACCCAAAGAATTGTCTGATTTGTGACAAATGTAATCAGAAATTCAATAAGAAGCGAGATCTTTTCTCGCATATCAAAAATTATCACAGAGAGGGTGGCTATCAGTGTGACGTGTGCCCTCAAAGTTTTAGTTctctaaatatattaagaaaacacAAAAGCAATCGTCATCTGACAAGATGTAATATATGTCACTTGCGACTGCCTTCTGCGGTtctcaaacaaaaacatatgGAGATAGAGCATCCCGATGATGGGTCTCTCCAATGCGATATTTGCTATAAagattttcatacaaaacaaGGGCTAAAAATGCATACGCGTAAATGTAAAGGCGATATATTCGATGTAGCTATTAAAAATGAAGAATTCGAAGTAATGGACTTAGATAGCAACTATGAGAGTGTTAAACGACCAAGTGTCAAACAAATTCGGGAAAATATCGTGATCGTGATAAATATGTCTACCGCGATAccgtttaatttttacaaaaataaatttaactgcTTCTACTGTTCTAAAGATTTCCCAGACTCTGATTCGATGAGAGAGCACACCGTCATAGAGCACCCTGTATGCGATGTAAAAGAGAAGTGCATCAGAAAGTGCCGAGAATCGGTTGCATGCGTGAAAATCGATATTTCATCGCTAGCTTGTAAAATTTGCTTCGAATCGATGAACGATCTCGATAATCTTTTGGACCATCTCATTATAAAACACAACGCGAATTACGATAAATCGATTACAACGTGTCTACAACCCTATAAATTGATTAAAGATCACATGGCATGTCCGAACTGTCCTAGCGAAGTATTTCGCTTTTTTGGTACTCTATTGAAAcatatgaataataaacatacCAATAATAACATAATCTGTGTCTACTGTGGTCAAACTTTTAGACGTGATCAGAATCTACGTGTCCATATATGGAGACACCATAGAGATGGTAGGTTCAAATGTAACATTTGTGGAGCAGAGTGTAATATACCATCGAGATTGTATATGCACATGGCGAAAGCTCATGGTGTCAAAGCAGCGAAATGTCCAAAATGTCCAGAAAGCTTTGCCACACAGTATCTAAGACAAAAGCATCTGATAGAAGCTCACGATTCAGGCCACAAATGTTCGTATTGTGGGAAACTTTTCACTCGAAATTCCTTTATGCGAGATCATATAAGACGTACGCATTTGAAGGAAAAGAATGTTGAATGTTCCATTTGTAATATGAAGTTTTTCAACAATATCCTCTTGAGGAGGCACATGGTGAAACATAGTGGGGAGAAAAATTTTCACTGTGACATCTGTGGTGAGAGGTTTTATTGGAGGAAAAGTTTGCGTACGCATATGGCTAGGCATAGTAAGCTAATAAATgctatatag
- Protein Sequence
- MEFDEIIVKESPGLCRCCLSEGCYKDLGTEYVWMDETEVYADMLLECFDISISQHIEGPNGPSRLICEVCITRLRDACNFKKQVLESEKKFIDMLGRGEFKTKVIVYQEQMKSEDNIDAQATGEAEVEFLEEDIDYDDGPNNDVSEPTVSEDITVATLPIKGKRGRPRKNAVKPEKKKSKIEDKPKTKVVRGEKRPEMAPEAVSKSSMSATKRNRLTKRNAIIILETSTVVPFKWHRHNYLCFFCHRTFKTLEPLKEHTRNDHKDSSIKSAVSYLKRDEKVKIDVSQTVCRICDENFDDVNTFVAHVESIHERVFADCGYGVIPYKLQDDKYKCAICGKDFQYFIKLNQHMNEHFGHYVCELCGKSFLSQDRLRCHAVSHGSHFKCNFCSEIFDSLTQKNNHEMAAHNKKPTIKCFFCPETFQNYITRKRHHHTAHNLDISLINCPVCGKTFHILSKMSAHLKEVHVREKNFACSICDQKFFSRTHVQKHMIKHVVEDFFSDIKPRKMKGCESSSMRRRKNLQLLFNNTTVIPFKWRGKYLCFYCSKDISEYSELRKHTKSHGDCSTKDHSLKVLKGGQNMEIKIDISEITCEICNEEFPVFDDVLSHLLVKHKLEFDREVDMAIEEYRLVDLSCLLCEEKFTYFGYLVSHVNNNHPKNCLICDKCNQKFNKKRDLFSHIKNYHREGGYQCDVCPQSFSSLNILRKHKSNRHLTRCNICHLRLPSAVLKQKHMEIEHPDDGSLQCDICYKDFHTKQGLKMHTRKCKGDIFDVAIKNEEFEVMDLDSNYESVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVIEHPVCDVKEKCIRKCRESVACVKIDISSLACKICFESMNDLDNLLDHLIIKHNANYDKSITTCLQPYKLIKDHMACPNCPSEVFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKAHGVKAAKCPKCPESFATQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDICGERFYWRKSLRTHMARHSKLINAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00256197;
- 90% Identity
- -
- 80% Identity
- -