Apag006971.1
Basic Information
- Insect
- Arge pagana
- Gene Symbol
- MBD-R2
- Assembly
- GCA_963969455.1
- Location
- OZ018310.1:14621161-14631750[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-18 3.3e-15 55.4 0.3 6 69 276 339 271 347 0.91 2 2 3.5 1e+04 -3.8 0.0 41 66 917 941 914 943 0.79
Sequence Information
- Coding Sequence
- ATGGTTAGCCGCGGAGGCATCAAGTTCTTTCCTGGCGCAAAGTTGGAAGCTAAGGATTTCAGCGAAAAATGGTACTCTGCACGCGTAGTCGAGACCGACTGGGCCGAAAGAGAAGTGTTGATACATTTCGACAAATGGAGttcacgattcgacgaatgGATACCAATGGACAGTTCCAGACTGAGAGTCCTTCAAAGTCCGCCCAACGAATCAACTTGGGCTGTCCCTCCTCTGGAGACGAAAATGCGCGAATTCGTCGCTGGGGAACCAATTTTAGCGACGTGGGCTGACGGCAGGAAATATCCTGCCAAAGTAAAGACCGTGCTGGGAAACGATAGGTACGATGTTTTGTTCGATGATGGCTACACCAAGATCGTGAGGTcttcgaaaatgacgaaaattgCAGTTACCCCCGAACAGAGACCAATCGATGAAGGTTACATTGGAAGTAAACAAGAGAGACGAGATAAAAAACGCAAACACAACGTCATGGAATTGTTCCATTCGACTACTAAAAAACGCTCCAGAACTGAATTCGAGAAATCCGTTCAGAAAGAACGACCATTGATGAGAGAAGATGATGGAAACTATGAAAACGCTGATTTGATACCTGCCTCAACGTACGACTCTGGTACTGAGCTTCTGAAAGGATTCGAACGTAATAAGCCAAAGGTCAAGACATATtcaaagaggaagaggaaagaggTGTCTAAAACAGACACAGATAATGAGGATGAAACAGGACCAGAGTGGGTCGATGGTGAACCGCAAGGAAAAGAATCATACATAGTGGACAGCAATGACGGACCACGTCGATCTATCATCGTGGCTGACAAGAGATTACCCTCCGGATGGCAAAAACATTTTACTCAAAGAAGAACTGGTACTTCGGCTGGAAAGTGGGATGTTTTGTTTATCCACAAACCGAGTGGAAAGAAGTTTAGATCAAGAAACGATATCAGAACTTTTATGGAACAGCAGGGCCAGTTCGATTTTGAACCAGACAAATTTGACTTTTGTATTCACCGAAAGAAGAACAATAGGAATAACTTCGCAAAATTGAGGCAGGAGATATCGAACGAAACACCAAAGAAGATAAAGACTCTGTTACCCAAAGCAAAAATAGCAACGAATATTCCGGAAAGCACGCCACTTCCAATGGTAACAGTGACAACTGCATCACCTCAAACTACCCCAGTGATACCAATTGACTCTGGTGCCGTTTTCATTGGAACTCTCCGGGTGGAAATGGAAGACAGCGCTTATAAGTGTCCGAAAGAAGGTTGTAACAAGACTTTCCGTAAAGAGAATCTCCTCCAGATGCACATAAAGCATTATCATCCAGAATACTCGAAATTTTTGGGTTCCACGCCCAACGTCGCGGATTTAGCGTACGCAAGAACGATCGGTGAATCAGTTGAAGATGTAATCCCAAAGAAAACTAACGGTTTCATGgataagataaataaattcgaaagaaAGAAGACTTCCCATGAGAAGAACGTATCTGCTAGCGAATCCGAGCCTAATCGTCCGGAGAAAACTTTCGGTTCTTTGATTAAGGATGATTCTAAAACCGACGTTGACTCACCTCTCTCTAGTCAGTGTGCTGAGATTGCGGAAGACCCTCTGAAAAAAAGGGAGGCAAATTGTGCCATGTCGCCCAGTACTTtgttcgatttgaaaatcagagaagaaaaaacccaAACTGGCATTAAGACTCTGTTACCTGTACGGCCCGTGTTGACTCCTATAGTTTCATCAAATGTTCCGATGGAACCGCAAAAATCGGACATGACCAAGCCAACGGACGAAGCAGTAATATCAGATAAaggaaaatcgatgaaaaagagACCAACGCCAGAACATAACTTGGACATGTCTGTGAGATGTAAGAAGAAGCAAGGCATGCAAGAACTGAAGGAGGACTTTGGTGACTTGGATGAGAGTACAGTGGACATCGAGGGACCAACTATCCCGACGTACCGGTTTagtcgtcgaaaatctgacCCTAAAAGTGACGAGAATAGCCAAACCAGTCAGCTATACGATTCCCATCTTGAAAAAGGTGAAACCCCAAAAGGGGATGCTGCCAAAAATGATATTATTAATGATGCAGAAGATGGAGATGGTGcagtgatgatgatgatcaaCGGGGAACTTGTCAAAGTGGAGCAACTTAGACGCGAAGAAATCATAAACTGTACGTGTGGTTTTATGGAAGAGGATGGGCTAATGATCCAATGTGATCTGTGCCTTTGTTGGCAGCATGGACACTGTAATGCCATCGAACGGGAAAAAGATGTCCCAGAGAAATACGTGTGTTATATCTGTTTGCATCCCTATAGACCACGccgatccaaaaaatatatccaCGATCAGGACTGGATAAAAGAAGGAGAGTTGCCCAGTTTGCCGAACCGTCCGAAAAATCATACAGCAATCAATCGGAGAACTGCCATGTTGAAACGTTCATACGATTTGGTTGCCGCATTATTGCAGATACAGCAAATATTGCACAGTCTGCGAGTGAAAATCAATGTTGCCCAGAAAAAGGATCACCCAAAACTATATCTATGGGCGAAGAATTGGGAAAAGACTGAAATCTTGCCACCGATGACAGAGCCACTGCCGTTAATGAAAATAGTTGAACCATCTTTCGAATCAACCGAGTCCAGCTCTGACAGCACACTGCTCACGGAGGTGAAGATAGAAGTTAAAGAGGAGCTTAAAGAAGAACCAGATAAAAAGTCGATCGCTTCGGATACGGAACTAATGAAGATCTTGGAAGAGGATAGTTCACATTCGGaggatgtgaaaaatatcaaaaaacaAGAGTTAGAAACCGAAGGTCATATCCTGCTAGATGCATTGACTAGAACTAATTTGGAACCAAAATCTTTAAAACCACTCGAAAATGCAGATGCAGTCCCAAACGGTCAGGCTTCTACCTCAAAATCTGATGATATCCTACCACTAGCAACTGACAAAGCTGAACCATCCACCGATCTCAATAATGTATTGTCCCTACGGCCGTTCGTACCAGAACCAGAAGCTCCAATCGATCCAGCTGAGTGTAGAATGCGGCTACTGGAACACGTAGAACATTTCCAGAATCACATCGATAACAGACTTATCTCTATCGAGGCGCAAGTAATCGCATTAGAAGCAATGGACCCGGACGACTCCGCGTTAAATTCCGATCTTCTGCCACGAACGAAACAAACTATGCAAATGCTGATTCGCGATTTGGCCACCGTCAGAAAACTCGCGGCGTTGTGCTGA
- Protein Sequence
- MVSRGGIKFFPGAKLEAKDFSEKWYSARVVETDWAEREVLIHFDKWSSRFDEWIPMDSSRLRVLQSPPNESTWAVPPLETKMREFVAGEPILATWADGRKYPAKVKTVLGNDRYDVLFDDGYTKIVRSSKMTKIAVTPEQRPIDEGYIGSKQERRDKKRKHNVMELFHSTTKKRSRTEFEKSVQKERPLMREDDGNYENADLIPASTYDSGTELLKGFERNKPKVKTYSKRKRKEVSKTDTDNEDETGPEWVDGEPQGKESYIVDSNDGPRRSIIVADKRLPSGWQKHFTQRRTGTSAGKWDVLFIHKPSGKKFRSRNDIRTFMEQQGQFDFEPDKFDFCIHRKKNNRNNFAKLRQEISNETPKKIKTLLPKAKIATNIPESTPLPMVTVTTASPQTTPVIPIDSGAVFIGTLRVEMEDSAYKCPKEGCNKTFRKENLLQMHIKHYHPEYSKFLGSTPNVADLAYARTIGESVEDVIPKKTNGFMDKINKFERKKTSHEKNVSASESEPNRPEKTFGSLIKDDSKTDVDSPLSSQCAEIAEDPLKKREANCAMSPSTLFDLKIREEKTQTGIKTLLPVRPVLTPIVSSNVPMEPQKSDMTKPTDEAVISDKGKSMKKRPTPEHNLDMSVRCKKKQGMQELKEDFGDLDESTVDIEGPTIPTYRFSRRKSDPKSDENSQTSQLYDSHLEKGETPKGDAAKNDIINDAEDGDGAVMMMINGELVKVEQLRREEIINCTCGFMEEDGLMIQCDLCLCWQHGHCNAIEREKDVPEKYVCYICLHPYRPRRSKKYIHDQDWIKEGELPSLPNRPKNHTAINRRTAMLKRSYDLVAALLQIQQILHSLRVKINVAQKKDHPKLYLWAKNWEKTEILPPMTEPLPLMKIVEPSFESTESSSDSTLLTEVKIEVKEELKEEPDKKSIASDTELMKILEEDSSHSEDVKNIKKQELETEGHILLDALTRTNLEPKSLKPLENADAVPNGQASTSKSDDILPLATDKAEPSTDLNNVLSLRPFVPEPEAPIDPAECRMRLLEHVEHFQNHIDNRLISIEAQVIALEAMDPDDSALNSDLLPRTKQTMQMLIRDLATVRKLAALC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -