Basic Information

Transcription Factor Domain

TF Family: GCFC
Domain: GCFC domain
PFAM: PF07842
TF Group: Unclassified Structure
Description: This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.011 63 3.0 0.0 30 49 30 49 25 68 0.82

2 7 0.41 2.4e+03 -2.2 0.0 31 48 71 88 65 104 0.70

3 7 0.058 3.4e+02 0.6 0.0 32 61 92 121 86 144 0.59

4 7 0.0033 19 4.7 0.0 18 49 138 169 130 189 0.74

5 7 0.014 79 2.7 0.0 29 50 189 210 179 226 0.77

6 7 0.0016 9.5 5.7 0.0 19 62 219 262 210 284 0.77

7 7 0.034 2e+02 1.4 0.0 30 47 290 307 285 326 0.90

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.011	63	3.0	30	49	30	49	25	68	0.82
2	7	0.41	2.4e+03	-2.2	31	48	71	88	65	104	0.70
3	7	0.058	3.4e+02	0.6	32	61	92	121	86	144	0.59
4	7	0.0033	19	4.7	18	49	138	169	130	189	0.74
5	7	0.014	79	2.7	29	50	189	210	179	226	0.77
6	7	0.0016	9.5	5.7	19	62	219	262	210	284	0.77
7	7	0.034	2e+02	1.4	30	47	290	307	285	326	0.90

Coding Sequence: ATGGGTCTGCTTATTAATGACTGGTCAGCTGGAGCTGGAAACGAATGGCGTTGCCGAAAGACGATTCGGGATCCGGTCACAGGATTCGGGATCTGCTCGCCAAATTTGAGATCTGCTCACATTATTTGGGATCCGCTCACAGAATTCGGGATCTGCTCGCTAAATTTGAGATCTGCGCACAGTATTTGGGATCCGCTCACAAGATTCGGGATATGCTCGTCAAATTTGAGATCTGCTCACATTATTTGGGATCCGCTCACAGGATTCGGGATCTGCTCGCCAAATTTGAGATCTGCTCACAGTATTTGGGATTTGCTCACAGAATTCGGGATCTGCTCGCCAAATTTGAGATCTGCTCACAGCATTTGGGATCTGCTCACAGGATTTGGGATCTGCTCGCAGTATTTGGGATCTGCTCGCAAAATTTGTAATCTGCTTACAGTATTCGGGATCTGCTCGCCAAATTTGAGATCTGCTCACAGCATTTGGGATCCGCTCACAGGATTCGGGATCTGCTCGCCAAATTTGAGATCTGCTCACAGTATTTGGGATTTGCTCACAAAATTCGGGATCTGCTCGCCAAATTTGAGATCTGCTCACAGCATTTGGGATCCGCTCACAGGATTTGGGATCTGCTCACAGTATTTGGGATCTGCTCGCAAAATTTGTAATCTGCTTACAGTATTCGGGATCTGCTCGCCAAATTTGAGATCTGCTCACAGCATTTGGGATCCGCTCACAGTATTCGGGATCTGCTCGCAAAATTTGAGATCTGCTCACAGTATTTGGGATCCACTCACAGAATTCGGGATCTGCTCGCTAAATTTGAGATCTGCGCACAGTATTTGGGATCCGCTCACAGGATTCGGGATCTGCTCGCCAAATTTGAGATCTGCTCACAGCATTTGGGATCCGCTCACAGGATTTGGGATCTGCTCGCTGGATTCGGGGTTTATTGGCAAAATTCGAGATATGCTGTTAGAATCGTTGTTTTGTGGTCAGAATTTCAAAGGTGAGAATATCGTTGGTTGTAGGTCGAGAATCGTGAATCTGATCGTTGAGGATGAAGAACGATGA
Protein Sequence: MGLLINDWSAGAGNEWRCRKTIRDPVTGFGICSPNLRSAHIIWDPLTEFGICSLNLRSAHSIWDPLTRFGICSSNLRSAHIIWDPLTGFGICSPNLRSAHSIWDLLTEFGICSPNLRSAHSIWDLLTGFGICSQYLGSARKICNLLTVFGICSPNLRSAHSIWDPLTGFGICSPNLRSAHSIWDLLTKFGICSPNLRSAHSIWDPLTGFGICSQYLGSARKICNLLTVFGICSPNLRSAHSIWDPLTVFGICSQNLRSAHSIWDPLTEFGICSLNLRSAHSIWDPLTGFGICSPNLRSAHSIWDPLTGFGICSLDSGFIGKIRDMLLESLFCGQNFKGENIVGCRSRIVNLIVEDEER

Sequence clustering based on sequence similarity using MMseqs2