Apag004650.1
Basic Information
- Insect
- Arge pagana
- Gene Symbol
- lola
- Assembly
- GCA_963969455.1
- Location
- OZ018309.1:14977022-14980956[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1 2.5e+03 -1.7 0.1 29 34 330 335 330 341 0.82 2 2 6.5e-16 5.2e-13 48.5 0.0 2 42 372 413 371 416 0.94
Sequence Information
- Coding Sequence
- ATGTCGATGCAACAATTTTGTCTCCGATGGAACAATCATCAGCCAAATTTCATCTCCGTTTTCTCTAACTTGTTGAATAACGAAACTTTAGTCGACGTTACTTTGGCTGCCGAAGGGCGACATCTACAAGCACACAAAGTCGTTCTGTCGGCATGCAGTACctattttcaatcgatattCACTGTAAATCCTTGTCAACATCCCATCGTCATACTGAAAGACGTCAAATTCTGCGACCTTAAAATTATGGTGGATTTCATGTACTACGGAGAAGTCAACGTCTCCCAAGATCAATTACCATCTATTATCAAGACCgcggaaagtttgaaaatcaaaGGACTCGCGGAAATGCATACAGAATCTGTAACCAAGTGGGCTAGCGGCAGCAGCGAACCAGGAGGGGGAGAACGAGGAGAATCCTGTTCACCTAGTCCCTCTCCTTTATCACCGACGTTACGTCGTAAGCGACTGAGAAAATCTTCGACTGGTTCGACGTCTGGATCTGGACAAAAATCggaggaaataaatgaaattacgTTAGTGGCGACTAACGTTGTCAAGCCTGAACCATTGATTATGTCTCAAGAAGGCGGCGAGCAATTGAGAAGACCTATGAATATTAGTTCGGAATCGCAGGGGAGCATCGACGAAGATCAGATATCAATTATGAGCAATATGGAAAGTAGTTCTACCAACGCAACGGCACAGAACGAGGGTTCGCTACAAAGTATGGGGCAACAATCTGGAAGTAACACGCCACAGAGTACTAGTACGTCTCAAACGCCTGGACATCAAGGCTTGCAATGGACAATCATGGAACACACGTATCCACGATTCGCTCTGTCGTCATGTCAAACCAATCTGTCGGTCCAAGCACCATCAGCTTTTACCACACCTGAAATAACAACGCCACCACCGATCACCGGTCAATACTCCACTACGAGCACGACGACGACTAGTTGCGATTTGACGAATTATTCCAACTCGCCGCATTCCACTCTTCAACATTCGTCCAACGAGCCAACGCCGCCACCTTGTACGACGAACTGCCAAAGTCCCTGCGCCAATCCGCAAACAGCGGTTAAACGAAAGCGATCAACTAATCCTCAAGCCGACGAAAACTTTATCCGAGCACTTGACGCCGTGAGGTACGGTGGAATTGGCTTTTGCAAAGCTGCCCGTATGTTTGGCGTCAATAACCGAACTCTTTGGCTGGAGTATAAAAAACGTGGATATCCAAACAATAGGCCTAGTGTTAAATCTAGAGTGAAACAGGAAGCTGCCTCGTCGCCACCGCCAGCTCAGACAAGCCAATCTGTCGATACGTCGCAAAGTCCATCGCCAATGGGACCGCCGTCCACGCCTCACAGTACATTAAATACTCATCCGACGCATACAATGCACATGGCACACTCGCCACATCCTATGCTGAGCAGTTATCTCGATAACCGGCACACCGACTTTGCCATTCAAAGCACTGCGATGCCGATAAATTTGCACGGTGTGAATTACAATGCCATGTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSNLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSIFTVNPCQHPIVILKDVKFCDLKIMVDFMYYGEVNVSQDQLPSIIKTAESLKIKGLAEMHTESVTKWASGSSEPGGGERGESCSPSPSPLSPTLRRKRLRKSSTGSTSGSGQKSEEINEITLVATNVVKPEPLIMSQEGGEQLRRPMNISSESQGSIDEDQISIMSNMESSSTNATAQNEGSLQSMGQQSGSNTPQSTSTSQTPGHQGLQWTIMEHTYPRFALSSCQTNLSVQAPSAFTTPEITTPPPITGQYSTTSTTTTSCDLTNYSNSPHSTLQHSSNEPTPPPCTTNCQSPCANPQTAVKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSVKSRVKQEAASSPPPAQTSQSVDTSQSPSPMGPPSTPHSTLNTHPTHTMHMAHSPHPMLSSYLDNRHTDFAIQSTAMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00719318;
- 90% Identity
- iTF_00159219;
- 80% Identity
- iTF_00159219;