Apag007157.1
Basic Information
- Insect
- Arge pagana
- Gene Symbol
- bab2
- Assembly
- GCA_963969455.1
- Location
- OZ018310.1:17550709-17566179[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.8e-12 4.7e-09 35.8 0.0 2 39 378 416 377 420 0.90 2 4 4.8e-12 3.8e-09 36.1 0.1 2 39 432 469 431 472 0.94 3 4 4.6e-18 3.7e-15 55.3 0.0 4 45 489 531 486 531 0.96 4 4 5.9e-18 4.7e-15 55.0 0.1 1 42 538 580 538 581 0.97
Sequence Information
- Coding Sequence
- ATGGAACGGGATTGGGGAACGTATTACAGTGGCGGAATGGCGGGGCAGCACTACTGCCTGCGCTGGAACAACTACCAGTCGAACATGACGTCCGTGTTTCATCAGCTGCTTCAAACCGAGGCATTTGTGGACGTGACCTTAGCGTGTAACGAAGCATCGCTGAAGGCCCACAAGGTGGTCCTGTCAGCATGCAgttcgtattttcaaaaactactCCTCTCAAATCCCTGCAAACATCCGACGATCATCATGCCGCAGGACGTTTGCTTCACCGACCTCAAATTCATCATAGAATTCGTCTATAAGGGTGAAATCGACGTGTCACAAGCCGAACTCCAATCGTTGCTGAAAACTGCCGATCAGCTGAAGATAAAAGGACTTTGCGAAGTACCGGAAAGCAGAGACGGACCTCCCTCGGTTAGCTCGAGTTCTCCACCCCGGGATCATGATCCGACGACTCCGAGATTGAACTTTTCAAAACTGAGGAGACAGCATCATTCGAGGTATAAGAGGCCACGATTTGAACCCAGGATAGAACCGAGAGTCCCAAGGAGGTACAAAGAGGAAAACACCGAAGAATTTAGTCGCGACAATAAAGAGAATCATCGGGACTGGCAGACGGAAGATGAGGAGTTTGGCGAACCTACAGTAGTTCTGGAATCACGACAAAAAGATAAAACCAACGGGAACACGAATAACAACAACGGTGAGATGTTTTGTCACACAGGGATGGGACATTACGGGCATCACCCGGATCCAGGAGACGTCGATTTACCACCTGAAACGCAACCAACCCCGCCAAGTGCGACTCTCGTTGGGACCACGATAACGCATTTGAGAGACCCTGATCACCAGTCCACAGaaattgcaaattgtgacagtgtaaaaataaaatttgagaCACTGCACACGATGGACTCAACGGACACAATAGATATAGATAGTCATATGTCAGATCGAGCTAGCATCAGTTCAAAAGCAACTGGAGAAAATGACAACATGATGATGATCACTCCAGAGCTACTCGGCTTGATGCCGTCAGGCAGCTCCGGACATTCGGATACCGGGGATAACGGGAGACCTCATTCTGGTCAGATCGGACCACATCATCACGGGTCAAAATCTTGGTCGCAGGAGGACATGGACGCGGCGTTGGATGCTTTGAGAAATCACGACATGAGCCTGACCAAGGCATCCGCCACTTTTGGAATCCCTTCGACAACGCTCTGGCAAAGGGCACATCGCTTGGGTATCGACACTCCAAAGAAAGATGGACCAACAAAGTCTTGGAGCGACGAAAGTTTGAATAACGCGCTAGAGGCTCTTCGTACAGGAACGATATCGGCGAACAAGGCGTCGAAAGCTTTTGGAATCCCTTCGAGTACGTTGTACAAGATAGCAAGGCGAGAGGGAATCAGATTGGCAGCACCGTTCAATGCAAGTCCGACAACTTGGTCTCCCGTCGATTTGGATCGTGCGCTCGAAGCAATAAGGTCAGGGCAAACTTCTGTGCAAAGAGCTTCAACAGAATTCGGAATTCCTACGGGCACATTGTATGGCCGGTGTAAAAGAGAAAGAATCGAATTGAGCCGGAGTAATCCTACGCCATGGAGCGAAGACGCGATGACTGAAGCTCTCGAATCAGTTAGAATTGGTCACATGAGCATCAATCAAGCGGCAATTCACTACAACCTACCTTACTCGTCGCTTTATGGTCGCTTCAAGAGAGGCAAATACGAAGAACCGGTAGGCGCCGATATGTCTCAGGACAGCACCAGCCTACAACATTATCATAGCCCGAACCAAAACCACACCTCATCTATTCCCGATCAAATGCCATACCAGGGCAGCTGA
- Protein Sequence
- MERDWGTYYSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFTDLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCEVPESRDGPPSVSSSSPPRDHDPTTPRLNFSKLRRQHHSRYKRPRFEPRIEPRVPRRYKEENTEEFSRDNKENHRDWQTEDEEFGEPTVVLESRQKDKTNGNTNNNNGEMFCHTGMGHYGHHPDPGDVDLPPETQPTPPSATLVGTTITHLRDPDHQSTEIANCDSVKIKFETLHTMDSTDTIDIDSHMSDRASISSKATGENDNMMMITPELLGLMPSGSSGHSDTGDNGRPHSGQIGPHHHGSKSWSQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPVDLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKRERIELSRSNPTPWSEDAMTEALESVRIGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVGADMSQDSTSLQHYHSPNQNHTSSIPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01413017;
- 80% Identity
- iTF_00159224;