Basic Information

Gene Symbol
-
Assembly
GCA_029955255.1
Location
JARCGT010000172.1:171085-174130[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 1.5e-05 0.0011 19.8 5.0 1 23 223 245 223 245 0.98
2 26 2.7e-05 0.0021 19.0 0.4 1 23 251 273 251 273 0.98
3 26 1.2e-05 0.00092 20.1 1.3 1 23 279 301 279 301 0.98
4 26 0.00021 0.016 16.2 1.7 2 23 308 329 307 329 0.97
5 26 5.6e-06 0.00044 21.2 2.1 1 23 333 355 333 355 0.99
6 26 0.00011 0.0085 17.1 2.2 1 23 361 383 361 383 0.98
7 26 3.5e-05 0.0027 18.7 0.2 1 23 393 415 393 415 0.98
8 26 1.5e-05 0.0012 19.8 2.0 1 23 421 443 421 443 0.99
9 26 0.0002 0.015 16.3 4.4 1 23 449 471 449 471 0.98
10 26 0.015 1.2 10.4 2.9 1 23 477 499 477 499 0.96
11 26 0.006 0.46 11.6 3.6 1 23 505 527 505 527 0.98
12 26 3.3e-05 0.0025 18.8 3.2 1 23 533 555 533 555 0.98
13 26 0.00011 0.0087 17.1 2.7 1 23 561 583 561 583 0.97
14 26 4.6e-05 0.0035 18.3 2.1 1 23 589 611 589 611 0.99
15 26 1.1e-05 0.00088 20.2 2.9 1 23 623 645 623 645 0.98
16 26 7.7e-05 0.006 17.6 2.7 1 23 651 673 651 673 0.99
17 26 1.3e-05 0.001 20.0 0.9 1 23 679 701 679 701 0.97
18 26 5.7e-05 0.0044 18.0 2.0 1 23 707 729 707 729 0.99
19 26 5.8e-06 0.00045 21.1 0.5 1 23 735 757 735 757 0.98
20 26 1.4e-05 0.0011 19.9 3.1 1 23 763 785 763 785 0.99
21 26 0.00072 0.056 14.5 2.9 1 23 791 813 791 813 0.99
22 26 1.6e-05 0.0012 19.8 3.2 1 23 825 847 825 847 0.97
23 26 2.6e-06 0.0002 22.2 2.9 1 23 853 875 853 875 0.99
24 26 7.5e-05 0.0058 17.6 3.3 1 23 881 903 881 903 0.99
25 26 1.2e-05 0.00092 20.1 3.0 1 23 915 937 915 937 0.98
26 26 7.4e-05 0.0058 17.6 2.6 1 23 943 965 943 965 0.99

Sequence Information

Coding Sequence
ATGGAATGCAGACTTTGTCTCTGTACTGCTCCAATCGAGTCTTCTGTCTCCATCCACGATCATCCTCATCCATTGGCTGAATGCATTTTGACCTGCTGTCAGCTACATGTTAAAAAAGATGATTTGTTGCCAAATACTATATGCCTTTCATGTAAAAGCAATCTGGGATTGTTGAGCAACTTTAGAAACATTTGTATTCAGAGTGAAGAAACACAGAAACTAAGGCTGGCTGAGAGTTCAGATCTCAAAAAGGAAGAAATTATATTGGATGATATAATTTGGGAGGATGATATTGATATTAACTCCACATCAAATGTATGTCAACCGATCGTTGACGATGAGATTAATAAACCAGAGTCACGAAATTCGGATAAAGTATTTTTCGAAGCAGACCATTCAAGGCAAAACGCCACAACAATAGAAAATGAAATTCGGAGTGATGAAACACAGAGACTAAAGCTCGCCGAGAGTTTAGATATCAAAATAGAAGAAGTTATATTGGATGATTTAATTTGGGAGGATGAGATTAATGAAGCGGAGTCGAGCAATTCAGGAAAAGAATTTTTAGCAAAGCAAAACGCTTTAttaatacaaaatgaaaatgtcAGGAAAAATTCACAAATACGTGCCAGATACAGAAAATCTCACTCTAGGGTATCGATATCGCACAAATGCGAAATGTGCTTAAAATCTTTCACTACTAAGTTTAGCCTCAATCGACATATAAAATCTCATACTAATACAGTGAAATACGAATGCGATTCATGTTCTAAATCGTTCAATGCTAAAGCTAGCCTCATACGACATATCAATTCTCACaatgggataaaaccataccgATGTAaagtttgtttgatttcattctCAAGTAAGTCTAACTTCCGGGTACATGTAAAGATTCACACCAGGGAGAGTCGGTTAAAATGCGATATGTGCTCTAAATCGTTCACTCTGATGCATGAACTAGTTGTTCATATGAAATCCCACATGAAATCGTACAAATGCGAAATATGTTCTAAATCGTTAACTACTAAGACTCACCTAGCGGAGCACATGAATTCTCACAATGGTTTAAAACCACACCGTTGTGAATTGTGTTTGGTTTCATTCGCTCACAAATCTACCCTCTGGGCACATATAAAAACTCACACTCACACATATAAAGAGAGACGATTATTCAAGTGCGAAATTTGTCCCAAAGCGTTCTTTGTTAAGCCTAACCTCGTAGATCATATGAACTTTCACAATGGGAcaaaaccataccaatgtgaaGTTTGTTCGATGTCATTCATTCATAGGTATGCCCTCCAGAAACATGCGAAAACTCACACCAGTGAGAGACTGTTTCAATGCGACTATTGTTCAAAGTCGTTCAATCTGAAGCATTTACTATCGTCTCATATAAAATATCACATCGGGTTGAAATCGCACAATTGCGAATTGTGTTCCAATACGTACAATTATAAATCCAGCCTCTTGGAGCATATGAATTTTCAcaatgggataaaaccacaccaaTGTGAAGTTTGTTTGATGTCATTCACGCATAGGGCTTCCTATCGGGGACATGTAAAGACTCACACCAGGGAGAAACTGTTCAAATGCGAAGTGTGTTCTAAATCGTTCACTACCAAACTTACTCTCTTTAACCATAGGAATTCTCACGATGGGATAAAGCCACAccaatgtaaaatttgtttgatGTCATTCACGCGTAGTTCTGCCCTCTCTAAACATTCAAAAATTCACACCAAAGAGAGTCTGTTCAAATGCGATATTTGTTCGAGGACGTACATTCTGAAGCATAACCTAGTGGTCCATATGAAGTCACACACTGGGTCGAAATCTCACACCGGGGTGAAATTGCACAAATGCGAAATGTGTAGTAAATCATACACCACTAAACCTAGCCTCACGGAGCATATGAATTCTCACAATGGGATAAAACCATTCCGATGCGatgtttgtttgatttcattcactcaTAGAAATTCCCTCCGAGTACATCTAAAGACTCACACCGGGAAGAGACGGTTCAGATGCAAAATGTGTCCTAAATCGTTCACGGCTAAGCCTAACCTCCTAGATCATATGAATTTTCACAACAGgataaaaccataccaatgtgaaGTTTGTTCCACTTCATTCAGTCATAAGGCTTCCTTCTTGGTACATGCAAAGACTCACACCGAGAAGAAACGGTTCGAGTGCGGAATGTGTTCTAAATCGTTCACTACCAAGCCTACCCTCGTGAACCATATCAATTCTCACACGGGGATAAATCCATACCAATGTAAATTTTGTTTGATGTCATTCACTCGTAGGTCTGCCCTCtcgaaacatttaaaaactcacacCAAGGAGAGTCTGTTCAAATGCGATATTTGCTCAAGAACGTACATTCTGAAGCATAAACTAGTGCTCCATATGAAATCACATACTGGGTCGAAATCTCAGACTGGGGAGAAATTGCACAATTGTGATATGTGTACTAAATCGTATACTACTAGATCTAGCCTCATGGAGCATATGAATTCTCATACGGGGATAAAGCCATACCGATGTAAATTTTGTTCGATGTCATTCACGCGTAGGTCTGCCCTCTCGAAACATATAAACACTCACACCAAGGAGAGTGTGTTCAAATGCGACATTTGTTCAAGAACGTACATTCAGAAGCATAAACTAGTGCTCCATATGAAATCACATACCGAGTCGAAATCTCAGACTGGGGGGAAATTACACAAATGCGAAATGTGTACTAAATCCTATACCACTAAACCTAGCCTCACGGAGCATATGAATTCTCACAACGGGATAAAACCATTCCGATGCGaagtttgtttgatttcattcactcaTAGAAATTCCCTCCGGGTTCATCTAAAGACTCATATCGGGTAG
Protein Sequence
MECRLCLCTAPIESSVSIHDHPHPLAECILTCCQLHVKKDDLLPNTICLSCKSNLGLLSNFRNICIQSEETQKLRLAESSDLKKEEIILDDIIWEDDIDINSTSNVCQPIVDDEINKPESRNSDKVFFEADHSRQNATTIENEIRSDETQRLKLAESLDIKIEEVILDDLIWEDEINEAESSNSGKEFLAKQNALLIQNENVRKNSQIRARYRKSHSRVSISHKCEMCLKSFTTKFSLNRHIKSHTNTVKYECDSCSKSFNAKASLIRHINSHNGIKPYRCKVCLISFSSKSNFRVHVKIHTRESRLKCDMCSKSFTLMHELVVHMKSHMKSYKCEICSKSLTTKTHLAEHMNSHNGLKPHRCELCLVSFAHKSTLWAHIKTHTHTYKERRLFKCEICPKAFFVKPNLVDHMNFHNGTKPYQCEVCSMSFIHRYALQKHAKTHTSERLFQCDYCSKSFNLKHLLSSHIKYHIGLKSHNCELCSNTYNYKSSLLEHMNFHNGIKPHQCEVCLMSFTHRASYRGHVKTHTREKLFKCEVCSKSFTTKLTLFNHRNSHDGIKPHQCKICLMSFTRSSALSKHSKIHTKESLFKCDICSRTYILKHNLVVHMKSHTGSKSHTGVKLHKCEMCSKSYTTKPSLTEHMNSHNGIKPFRCDVCLISFTHRNSLRVHLKTHTGKRRFRCKMCPKSFTAKPNLLDHMNFHNRIKPYQCEVCSTSFSHKASFLVHAKTHTEKKRFECGMCSKSFTTKPTLVNHINSHTGINPYQCKFCLMSFTRRSALSKHLKTHTKESLFKCDICSRTYILKHKLVLHMKSHTGSKSQTGEKLHNCDMCTKSYTTRSSLMEHMNSHTGIKPYRCKFCSMSFTRRSALSKHINTHTKESVFKCDICSRTYIQKHKLVLHMKSHTESKSQTGGKLHKCEMCTKSYTTKPSLTEHMNSHNGIKPFRCEVCLISFTHRNSLRVHLKTHIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00158428;
90% Identity
-
80% Identity
-