Agra017950.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Arctopsyche grandis
Gene Symbol
-
Assembly
GCA_029955255.1
Location
JARCGT010000065.1:1955132-1958597[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 1.7e-05 0.0013 19.6 5.0 1 23 223 245 223 245 0.98
2 31 3.2e-05 0.0025 18.8 0.4 1 23 251 273 251 273 0.98
3 31 1.4e-05 0.0011 19.9 1.3 1 23 279 301 279 301 0.98
4 31 1.8e-05 0.0014 19.5 0.8 2 23 308 329 307 329 0.97
5 31 0.0004 0.031 15.3 0.2 3 23 337 357 335 357 0.97
6 31 4.9e-06 0.00038 21.4 3.9 1 23 363 385 363 385 0.98
7 31 0.00045 0.035 15.2 3.8 1 21 391 411 391 413 0.95
8 31 2.5e-05 0.002 19.1 0.9 1 23 419 441 419 441 0.98
9 31 0.00039 0.03 15.4 2.0 2 23 448 469 447 469 0.97
10 31 6.6e-06 0.00051 21.0 2.1 1 23 473 495 473 495 0.99
11 31 0.00013 0.0099 16.9 2.2 1 23 501 523 501 523 0.98
12 31 4.1e-05 0.0032 18.5 0.2 1 23 533 555 533 555 0.98
13 31 1e-05 0.00078 20.4 2.2 1 23 561 583 561 583 0.99
14 31 0.00023 0.018 16.1 4.4 1 23 589 611 589 611 0.98
15 31 0.018 1.4 10.1 2.9 1 23 617 639 617 639 0.96
16 31 0.007 0.54 11.4 3.6 1 23 645 667 645 667 0.98
17 31 3.8e-05 0.003 18.5 3.2 1 23 673 695 673 695 0.98
18 31 0.00013 0.01 16.9 2.7 1 23 701 723 701 723 0.97
19 31 5.3e-05 0.0041 18.1 2.1 1 23 729 751 729 751 0.99
20 31 1.3e-05 0.001 20.0 2.9 1 23 763 785 763 785 0.98
21 31 9e-05 0.007 17.4 2.7 1 23 791 813 791 813 0.99
22 31 1.5e-05 0.0012 19.8 0.9 1 23 819 841 819 841 0.97
23 31 6.6e-05 0.0051 17.8 2.0 1 23 847 869 847 869 0.99
24 31 3.7e-06 0.00028 21.7 0.6 1 23 875 897 875 897 0.98
25 31 1.6e-05 0.0013 19.7 3.1 1 23 903 925 903 925 0.99
26 31 0.00084 0.065 14.3 2.9 1 23 931 953 931 953 0.99
27 31 1.8e-05 0.0014 19.6 3.2 1 23 965 987 965 987 0.97
28 31 3e-06 0.00023 22.0 2.9 1 23 993 1015 993 1015 0.99
29 31 8.7e-05 0.0067 17.4 3.3 1 23 1021 1043 1021 1043 0.99
30 31 1.4e-05 0.0011 19.9 3.0 1 23 1055 1077 1055 1077 0.98
31 31 5.9e-05 0.0046 17.9 2.5 1 23 1083 1105 1083 1105 0.99

Sequence Information

Coding Sequence
ATGGAATGCAGACTTTGTCTCTGTACTGCTCCAATCGAGTCTTCTGTCTCCATCCACGATCATCCTCATCCATTGGCTGAATGCATTTTGACCTGCTGTCAGCTACATGTTAAAAAAGATGATTTGTTGCCAAATACTATATGCCTTTCATGTAAAAACAATCTGGGATTGTTGAGCAACTTTAGAAACATTTGTATTCAGAGTGAAGAAACACAGAAACTAAGGCTGGCTGAGAGTTCAGATCTCAAAAAGGAAGAAATTATATTGGATGATATAATTTGGGAGGATGATATTGATATTAACTCCACATCAAATGTATGTCAACCGATCGTTGACGATGAGATTAATAAACCAGAGTCACGAAATTCGGATAAAGTATTTTTCGAAGCAGACCATTCAAGGCAAAACGCCACAACAATAGAAAATGAAATTCGGAGTGATGAAACACAGAGACTAAAGCTCGCCGAGAGTTTAGATATCAAAATAGAAGAAGTTATATTGGATGATTTAATTTGGGAGGATGAGATTAATGAAGCGGAGTCGAGCAATTCAGGAAAAGAATTTTTAGCAAAGCAAAACGCTTTAttaatacaaaatgaaaatgtcAGGAAAAATTCACAAATACGTGCCAGATACAGAAAATCTCACTCTAGGGTATCGATATCGCACAAATGCGAAATGTGCTTAAAATCTTTCACTACTAAGTTTAGCCTCAATCGACATATAAAATCTCATACTAATACAGTGAAATACGAATGCGATTCATGTTCTAAATCGTTCAATGCTAAAGCTAGCCTCATACGACATATCAATTCTCACaatgggataaaaccataccgATGTAaagtttgtttgatttcattctCAAGTAAGTCTAACTTCCGGGTACATGTAAAGATTCACACCAGGGAGAGTCGGTTAAAATGCGATATGTGCTCTAAATCGTTCACTGCTAAGACTAACCTTGTGGATCATATGAATTCTCACAACGGATTAAAACCATACGGATGTGAACTGTGTTCGGTTTCATTCACTTATAGGTCTGCCCTCTGGGCACATACACAGACTCACACCGGGAACATATCGCACAAATGcgaaatttgcttaaaatctttCACTACTAAAAGTAAGCTCAATCGACATTTATTATCTCATACTGGAGTAAAATCGTACAAATgcgatttatgttataaatcgTTCAATACTAGAGATTACCTCATACAACATATCAATTGTCACaatgggataaaaccataccgATGTAaagtttgtttgatttcattctCAAGTAAGTTTAACCTCCAGATACATGTAAAGATTCACACCAAGAACAGTCAGCTTAAATGCGATACGTGTTCTAAATCGTTCACTCTGATGCATGAACTAGTTGTTCATATGAAATCCCACATGAAATCGTACAAATGCGAAATATGTTCTAAATCGTTAACTACTAAGACTCACCTAGCGGAGCACATGAATTCTCACAATGGTTTAAAACCACACCGTTGTGAATTGTGTTTGGTTTCATTCGCTCACAAATCTACCCTCTGGGCACATATAAAAACTCACACTCACACATATAAAGAGAGACGATTATTCAAGTGCGAAATTTGTCCCAAAGCGTTCTTTGTTAAGCCTAACCTCGTAGATCATATGAACTTTCACaatgggataaaaccataccaatgtgaaGTTTGTTCAATGTCATTCATTCATAGGTATGCCCTCCAGAAACATGTGAAAACTCACACCAGTGAGAGACTGTTTCAATGCGACTATTGTTCAAAGTCGTTCAATCTGAAGCATTTACTATCGTCTCATATAAAATATCACATCGGGTTGAAATCGCACAATTGCGAATTGTGTTCCAATACGTACAATTATAAATCCAGCCTCTTGGAGCATATGAATTTTCAcaatgggataaaaccacaccaaTGTGAAGTTTGTTTGATGTCATTCACGCATAGGGCTTCCTATCGGGGACATGTAAAGACTCACACCAGGGAGAAACTGTTCAAATGCGAAGTGTGTTCTAAATCGTTCACTACCAAACTTACTCTCTTTAACCATAGGAATTCTCACGATGGGATAAAGCCACAccaatgtaaaatttgtttgatGTCATTCACGCGTAGTTCTGCCCTCTCGAAACATTCAAAAATTCACACCAAAGAGAGTCTGTTCAAATGCGATATTTGTTCGAGGACGTACATTCTGAAGCATAACCTAGTGGTCCATATGAAGTCACACACTGGGTCGAAATCTCACACCGGGGTGAAATTGCACAAATGCGAAATGTGTAGTAAATCATACACCACTAAACCTAGCCTCACGGAGCATATGAATTCTCACAATGGGATAAAACCATTCCGATGCGatgtttgtttgatttcattcactcaTAGAAATTCCCTCCGAGTACATCTAAAGACTCACACCGGGAAGAGACGGTTCAGATGCAAAATGTGTCCTAAATCGTTCACGGCTAAGCCTAACCTCCTAGATCATATGAATTTTCACAACAGgataaaaccataccaatgtgaaGTTTGTTCCACTTCATTCAGTCATAAGGCTTCCTTCTTGGTACATGCAAAGACTCACACCGAGAAGAAACGGTTCGAGTGCGAAATGTGTTCTAAATCGTTCACTACCAAGCCTACCCTCGTGAACCATATCAATTCTCACACGGGGATAAATCCATACCAATGTAAATTTTGTTTGATGTCATTCACTCGTAGGTCTGCCCTCtcgaaacatttaaaaactcacacCAAGGAGAGTCTGTTCAAATGCGATATTTGCTCAAGAACGTACATTCTGAAGCATAAACTAGTGCTCCATATGAAATCACATACTGGGTCGAAATCTCAGACTGGGGAGAAATTGCACAATTGTGATATGTGTACTAAATCGTATACTACTAGATCTAGCCTCATGGAGCATATGAATTCTCATACGGGGATAAAGCCATACCGATGTAAATTTTGTTCGATGTCATTCACGCGTAGGTCTGCCCTCTCGAAACATATAAACACTCACACCAAGGAGAGTGTGTTCAAATGCGACATTTGTTCAAGAACGTACATTCAGAAGCATAAACTAGTGCTCCATATGAAATCACATACCGAGTCGAAATCTCAGACTGGGGCGAAATTACACAAATGCGAAATGTGTACTAAATCCTATACCACTAAACCTAGCCTCACGGAGCATATGAATTCTCACAACGGGATAAAGCCATACCGATGCGaagtttgtttgatttcattcactcaTAGAAATTCCCTCCGGGTTCATCTAAAGACTCATATCGGGTAG
Protein Sequence
MECRLCLCTAPIESSVSIHDHPHPLAECILTCCQLHVKKDDLLPNTICLSCKNNLGLLSNFRNICIQSEETQKLRLAESSDLKKEEIILDDIIWEDDIDINSTSNVCQPIVDDEINKPESRNSDKVFFEADHSRQNATTIENEIRSDETQRLKLAESLDIKIEEVILDDLIWEDEINEAESSNSGKEFLAKQNALLIQNENVRKNSQIRARYRKSHSRVSISHKCEMCLKSFTTKFSLNRHIKSHTNTVKYECDSCSKSFNAKASLIRHINSHNGIKPYRCKVCLISFSSKSNFRVHVKIHTRESRLKCDMCSKSFTAKTNLVDHMNSHNGLKPYGCELCSVSFTYRSALWAHTQTHTGNISHKCEICLKSFTTKSKLNRHLLSHTGVKSYKCDLCYKSFNTRDYLIQHINCHNGIKPYRCKVCLISFSSKFNLQIHVKIHTKNSQLKCDTCSKSFTLMHELVVHMKSHMKSYKCEICSKSLTTKTHLAEHMNSHNGLKPHRCELCLVSFAHKSTLWAHIKTHTHTYKERRLFKCEICPKAFFVKPNLVDHMNFHNGIKPYQCEVCSMSFIHRYALQKHVKTHTSERLFQCDYCSKSFNLKHLLSSHIKYHIGLKSHNCELCSNTYNYKSSLLEHMNFHNGIKPHQCEVCLMSFTHRASYRGHVKTHTREKLFKCEVCSKSFTTKLTLFNHRNSHDGIKPHQCKICLMSFTRSSALSKHSKIHTKESLFKCDICSRTYILKHNLVVHMKSHTGSKSHTGVKLHKCEMCSKSYTTKPSLTEHMNSHNGIKPFRCDVCLISFTHRNSLRVHLKTHTGKRRFRCKMCPKSFTAKPNLLDHMNFHNRIKPYQCEVCSTSFSHKASFLVHAKTHTEKKRFECEMCSKSFTTKPTLVNHINSHTGINPYQCKFCLMSFTRRSALSKHLKTHTKESLFKCDICSRTYILKHKLVLHMKSHTGSKSQTGEKLHNCDMCTKSYTTRSSLMEHMNSHTGIKPYRCKFCSMSFTRRSALSKHINTHTKESVFKCDICSRTYIQKHKLVLHMKSHTESKSQTGAKLHKCEMCTKSYTTKPSLTEHMNSHNGIKPYRCEVCLISFTHRNSLRVHLKTHIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00158430;
90% Identity
-
80% Identity
-