Axyl013627.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387347.1:4540150-4551129[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.17 13 7.3 1.8 2 19 498 515 497 516 0.96 2 10 0.011 0.8 11.0 1.4 1 23 535 558 535 558 0.96 3 10 0.18 13 7.2 3.6 3 23 565 587 563 587 0.90 4 10 0.12 8.7 7.8 0.6 2 21 639 658 638 659 0.91 5 10 4.2e-06 0.00031 21.8 0.9 1 23 721 742 721 742 0.98 6 10 2.4e-05 0.0018 19.4 2.5 1 23 748 771 748 771 0.97 7 10 0.01 0.75 11.1 2.7 2 19 783 800 782 803 0.92 8 10 0.062 4.5 8.7 1.4 2 23 809 832 808 832 0.95 9 10 0.00054 0.039 15.2 3.1 2 23 840 861 839 861 0.97 10 10 0.00082 0.059 14.6 3.1 1 20 867 886 867 888 0.95
Sequence Information
- Coding Sequence
- ATGCTGTCGCTACGAGACGACGATGATGATGACAGTCATCTTTGCATCAAGTGCAACGCCACCATTATAGGACTTGAGAACTACGTCAAGCACAGAAAAGAACGATGCGCTAAAACCAAACCGGTACCAAAAGTTGACCTGCCGATAGATACTCTGGAACCTACGTACAATCTTGGGGCTGATGTTTTCTTCCAATCTTTGGAACTCCAGAGTAGCGTTAAAAAGACATCGTTGTCACGATTAACACCGCCTATACCAATATCAAAGAGTAGTCTAGATAGGAAAAATGCTTTGGCAGTGGCGTCTACTTCAAGGGATATACCAACTATGAGTCCGGTTGAGAGCAATTTTAGAGGTGGAGACTGGATTGGAGGACACAGTTTAAGAATTGGTAGCAACGAAGATAACCAAACTAAATTGATTAACGCTGTTGCAAGCATTAGCGGTGCGGTAAAAAAAGATATACCAACATCTTCGTACAGTATCGGACCGTTCAACGATTTTAAAGCTGACGACGAATCTGATGAATCCGAAGACTCAGAAGACGATGACGATGAAGAACCTCCAACCGGTGGTAAATGGAAACCACCTCCGAACTACACTGGTGGTAAATGGCGCCCTGTGTCCCCGGAACATGAAGAGTGGGTGATGAGAGATGAGCAAGAGCATACAGGAGGTAAATGGAGACCTATCATGGCTGATACTAATGAAAGGGATGAAGATTATGATGCTCCGCCCCCAGGACATACTAAAGGAAAGTGGGTCCCAGGAGCCAATGAGAAATCTCAGATCATGCAGACAACTTTACAAACTAAAGGATCTGTGCAGTACTGGTGTGGTCCATGTAATAGAAGATTAGGTTCACGAGCGATTTACGAAAAACATCTCATGTCCAAGTTGCATATGAAGAAAGTTCTACCAGAGCATGAACTTGAGTTTTCCGGACACCTGCAGCCTTTGAGGCATACTGTTGAACAGAACAGTCGAAAACTACGATCTATAACCAAACCTGCACCCCAGAAAAAGAAACCTACAAGCGTAAAAGTTAGTGAGATCGAGAAAAAAAATAAAAGAAAACGGAAATTACGTTTTGTAAACTGCCCTGGTTGCAAATCGAGAGTAAGGCAGCATTTGATGGGAAAGCACTTAATATCTCATTATCATTTTCGAAAAGCTTCAACGGTACAAAGCCAAGTCTATCGCCAGCTGATTTTAAGCAACATTGACGTCATCGTGCACCAATCTCCATTCCAATGCAGCCCTTGTAAATTCTACACAAACTGGCTACCACATTTCATGCGACATTGGTCATCTGATGAACACAACGAGAAAACCCTATCGATGGATGGAAGATATTGGTGCTCTTTTTGCAAATTCGAATGCGATTCTTCCGTCGAGATGCTTCTCCATCTTACCGGAGCTGATCACAGCGAGGTCGTCGCCGTTATCAACAGATCAATGCCCATTATTATAAGAAAAAGAAGCATTCTGAAATGCGAGACTTGCTATAAAGAGTTTAGGTACAATGCTGAGATTAGGAGACACTGTGAGCTCGTAGGTCATCAGTTAACATACACGGCTACCGATGAGTACCAAGAGCTTCATAATTGCCAACAATGTTCAGCGAAGTTCAAGTCTTCGCTCACTTTGGCGGCACACTTAAAGTCTGTTCATAAGCAGAAGACTCACTTATGCTTGGTATGCTCCAGAACATTCTGTTCTTCAGAAGAAGCAAAGCAACATAGAAATACATCAGAGCATAGATTAAAAAGAAGGGCTAATATGAAAGCACGTGGTATTCCAGTCAAAGAGATAAGTAAGAAGTGCCCGTATTGCATTGAGAAAAAAGTTGTTTTGCCGAATATTTTGGAACTGAAAGATCACATTAGGCGGATGCATCCTAATAATAAAAAAAAGTGTCCTAAATGCGGCATGTCCTTCCTTCTTCACCAGGAAGTAACACGACACATCAGATCAAACGCTTGCCAATTCCGGAACTGGCTAGCTCCCAGCTCTTCACAATCCTTCCAACTCTGGAACTGTAGCCAATGCCTATTCACCACCGACTCTCAAGCCGAATGCTACTTCCATGAAGTCCTGCACACCGTTCCTGTGAAAGAAACTCTTACAGTAGAAAACAAAGAGAAAATTATTCTTAAATATGAGTGTCCTCTGTGTCCGAAAAGCTTTCGAAAGTCTTCGCTCCGGTTGCATTTAAGACAGCATACGTGCGAAAGGCCGTTTGTTTGTACAACTTGTGGAGCCAATTTTACGAGGAAAAGCAGTTTATGCAACCATGTGCAGAAGGAACATGAGATAGCTAAAGAGGACAAAGTAGAGGAGATCCAGTGTGGGAAATGCAAGAAGAAGTTCTCGAGCAAAAACGAGCTTTCGCTGCATTCTTGTTCAGCTACACCGGAACTAAGCTGCCATTTCCAACAGTGTACTTATGTTGCATCAACTTCAACACAATTAGCAAAACATTACGCGACCCATGGCGAGCGGCTGAAACATCTGAAATGTTCACAATGCCCGTTCAAGACTGACCAGAACAGTCACCTGAAGAGACACTTAATAACTCACCAAGCTTCTAAGCCGTATAAATGCCCACATTGTGACTTCACTTGTGCTAGTTTGGAAAACCTTCGTAAACACGCTCTCCATCGCCGCTTGCATCCTGGTTTGCCGCTGTACCGCTGCCGCGTCGGCGCCTGCGCATACGGCGTCAACACGGCCACGGAGCTGCGCGCGCACTTGACGGCAGAACACGCCGACCAATACGGCGCGAGGGAGGCTGTTGACGCCGTCAAACGGCATCTGATGATAGATTAA
- Protein Sequence
- MLSLRDDDDDDSHLCIKCNATIIGLENYVKHRKERCAKTKPVPKVDLPIDTLEPTYNLGADVFFQSLELQSSVKKTSLSRLTPPIPISKSSLDRKNALAVASTSRDIPTMSPVESNFRGGDWIGGHSLRIGSNEDNQTKLINAVASISGAVKKDIPTSSYSIGPFNDFKADDESDESEDSEDDDDEEPPTGGKWKPPPNYTGGKWRPVSPEHEEWVMRDEQEHTGGKWRPIMADTNERDEDYDAPPPGHTKGKWVPGANEKSQIMQTTLQTKGSVQYWCGPCNRRLGSRAIYEKHLMSKLHMKKVLPEHELEFSGHLQPLRHTVEQNSRKLRSITKPAPQKKKPTSVKVSEIEKKNKRKRKLRFVNCPGCKSRVRQHLMGKHLISHYHFRKASTVQSQVYRQLILSNIDVIVHQSPFQCSPCKFYTNWLPHFMRHWSSDEHNEKTLSMDGRYWCSFCKFECDSSVEMLLHLTGADHSEVVAVINRSMPIIIRKRSILKCETCYKEFRYNAEIRRHCELVGHQLTYTATDEYQELHNCQQCSAKFKSSLTLAAHLKSVHKQKTHLCLVCSRTFCSSEEAKQHRNTSEHRLKRRANMKARGIPVKEISKKCPYCIEKKVVLPNILELKDHIRRMHPNNKKKCPKCGMSFLLHQEVTRHIRSNACQFRNWLAPSSSQSFQLWNCSQCLFTTDSQAECYFHEVLHTVPVKETLTVENKEKIILKYECPLCPKSFRKSSLRLHLRQHTCERPFVCTTCGANFTRKSSLCNHVQKEHEIAKEDKVEEIQCGKCKKKFSSKNELSLHSCSATPELSCHFQQCTYVASTSTQLAKHYATHGERLKHLKCSQCPFKTDQNSHLKRHLITHQASKPYKCPHCDFTCASLENLRKHALHRRLHPGLPLYRCRVGACAYGVNTATELRAHLTAEHADQYGAREAVDAVKRHLMID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00021729;
- 90% Identity
- iTF_01136277;
- 80% Identity
- -