Basic Information

Insect: Archips xylosteana
Gene Symbol: -
Assembly: GCA_947563465.1
Location: OX387371.1:852172-870324[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00054 0.039 15.2 0.9 1 23 319 341 319 341 0.98

2 12 0.76 55 5.3 4.1 1 23 391 413 391 414 0.94

3 12 0.011 0.77 11.1 0.6 2 21 421 440 420 444 0.90

4 12 0.56 40 5.7 3.3 1 23 448 470 448 470 0.86

5 12 0.00016 0.012 16.8 0.7 1 23 475 498 475 498 0.96

6 12 0.00093 0.068 14.4 0.1 3 23 505 526 504 526 0.96

7 12 0.024 1.7 10.0 0.0 1 20 536 555 536 557 0.95

8 12 9.9e-05 0.0072 17.5 0.8 2 23 596 618 596 618 0.94

9 12 0.02 1.5 10.2 1.8 2 23 641 662 640 662 0.94

10 12 0.00094 0.068 14.4 7.1 1 23 668 690 668 690 0.99

11 12 9.1e-06 0.00066 20.8 0.3 1 23 696 719 696 719 0.95

12 12 3.5 2.5e+02 3.2 0.1 2 23 725 746 725 746 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00054	0.039	15.2	0.9	1	23	319	341	319	341	0.98
2	12	0.76	55	5.3	4.1	1	23	391	413	391	414	0.94
3	12	0.011	0.77	11.1	0.6	2	21	421	440	420	444	0.90
4	12	0.56	40	5.7	3.3	1	23	448	470	448	470	0.86
5	12	0.00016	0.012	16.8	0.7	1	23	475	498	475	498	0.96
6	12	0.00093	0.068	14.4	0.1	3	23	505	526	504	526	0.96
7	12	0.024	1.7	10.0	0.0	1	20	536	555	536	557	0.95
8	12	9.9e-05	0.0072	17.5	0.8	2	23	596	618	596	618	0.94
9	12	0.02	1.5	10.2	1.8	2	23	641	662	640	662	0.94
10	12	0.00094	0.068	14.4	7.1	1	23	668	690	668	690	0.99
11	12	9.1e-06	0.00066	20.8	0.3	1	23	696	719	696	719	0.95
12	12	3.5	2.5e+02	3.2	0.1	2	23	725	746	725	746	0.77

Sequence Information

Coding Sequence: ATGGAGTCAAGTGAGGAGCTGGTCGCTTGCCGCGCGTGCCTCGCGGCGGACGGGCGGTTGTATGCCATAAGCGGCAGCGGGTTGGAAGACACGCTCGCGGCACTCACTGGAACAGCTTTGCCAAAGGAGGATAGTTTGCCGCGTCACCTGTGCGTGTACTGCATGGCGAAGCTGTCAAAGTGTGCCGCCTTCCGTGACAGCTGTCAGCGGAGCGCGGCGCTGCTGAAGACCCTATCGGAAAAGGGCTCGTTAAAAATGAATTTTATCGAGGCATATAACCGAAAGTCACAGCCGCTGACTAACAAACTCACTCACAATAAACTCTTTCATTTCGGAACCGATTCGTTTATAGAAATAATGCCTCTAATTAAAACTGAAAATAATGAAAATTCACACGAAGAAGCTAAGTGCGCAGAAGTGTATATAGAAAGCGAAAATTATGTAAAAAAAGATGCTAGCGACGTAGACAAGTGTACTTTAGAATTGCCAATAGAAAAACGAGAAAGATCTGGAAGCAAGGTAGTCAAATCGAGAACGAAAAATACTGAATGTATCAAAGTCGAAGTTGAAATTGAAAATGATAACGCACATTCAGAAATAGATGATTGCATTGAATCTGAAGTGGGAAATGATACCAGTGACGTTGACACGGACGCATCGGAAGAAACACTGGCTGCAGTCGGAAATCGTAAAAGAACAAAAATAACTTTGACAAAAAATAATACAGCTAAACGTCCAAAGAAACCTAGAAACTTACTAACTGAAGATAAACATCCAACTGAAATAAATACCGATACATCTGAAGCAACAACTGGGTTAAACAAAACGGTTGGAATTAAATCTGTAGGTGCGGAAACAGCGTTCGAGAAGAAAAATAATCGTAACGCAAAAGCTTTGGATACAGACGTAAAGAAACCAAAGTTGCAGAAGAGGAAACGGAGGAACAAGTCCATATACAGCTGCGACTTGTGCGGGAAGGAGTACAAGAGTGAAAGGTATTTGAAGCCACATATGAGTCGTCATGACCCGAATATGTCGAAAGAAACAATAGCTACATTAAAAAAAGATGCTGATTTAGAGTTTGAGAAAAAGTATAACTTTGAAATAAAACTGTTGAGTAAAGAAGAACAGAAACAGAGGATAGAAGAGAGGAAAAAGAACAACTCTGCGCACAGCTGCGACGTCTGCGGGAAGGACCACACCAATGAACGCACTTTAGCAGCGCACAAGACATCTCACCATGACCCGAGTCTGCCGGTGGAGTGCGACGTGTGCTTCTACCGGTTCCGGAGCCGCCAGGTGTTGCGGAAGCACCAGCTCGAGGACCGGCACCGGACCATCTTCACGTGTAACGAATGTGGCCATGTCACCCGGCGTAGAATTTACGCGAAAGACCATTGCCTCATGCACCGTGGGAAAACCTTCGCTTGCCCCTACTGCGACATGAAGTATGATCGCCAGAGCTCGTACTACGGGCACATGCGACTGCAGCATCCCGGGGAGAACGAGGCGTGCGACGAGTGCGGCGAGACCTTCACCGGGAAGGTGGGGTTATTGGTGCACAAGCGGCTGCGGCATAAGACTAACGACAATCCAAATGAAAACTTCAAATGTTCAGTTTGCGAAGTCACGTTTTTGAGTGCCGAAGCGCTGCAAAGGCACTTGGAGCTGAGTGTCGGCGTGCCGCATGCGGCGCTGTGGCCCTGTGCCGCATGCGGCGACACTTGTGGCAGCGAGCCCGCGCTCGCCGCACATGCCGCAGAGAAACACCCGCCCGAACAGCGTTACTGTAAAGAGTGCAACAAGACGTTCTCGGACGCTTCCTCGTTCGCTCTGCACGTGGACCGGAAGCACAAGAACCGGCGCGCGGCGCACGTGGGGCGCGCGCGGCGCGGGGTGCGCGGGCAGCACGGACGCTGCGTCTGCGAGATTTGCGGCAAGGTGTTCATGTGCATGGCGACTCTGCAGTACCACATGAACGGGCACTTGGGTCTCAGGCCATTCCAGTGCTCGCACTGTTCCAAGGCATTCACTCACAAAACAAAACTTATGTTCCATATGCGGGTGCATACGGGCGAGAAGCCCTACCAGTGCGAGCAGTGCCCGTTGGCCTTCTCTTTTAAATCCAACTTGATAAGGCACGAAAACAACGTGCATTTGCGGGTGCAAGCGGAATGCAAGTTTTGCGGCAAGACGATGGGCGCGGCTTCCCTCTCGCTTCATGTCCGCGCCGTGCACATGAATCTGGGCTACGTGCGCCGCAAACGGCCCCGGACGAAGAAGCCTGTCCGTGACGCCGAAACGTGA
Protein Sequence: MESSEELVACRACLAADGRLYAISGSGLEDTLAALTGTALPKEDSLPRHLCVYCMAKLSKCAAFRDSCQRSAALLKTLSEKGSLKMNFIEAYNRKSQPLTNKLTHNKLFHFGTDSFIEIMPLIKTENNENSHEEAKCAEVYIESENYVKKDASDVDKCTLELPIEKRERSGSKVVKSRTKNTECIKVEVEIENDNAHSEIDDCIESEVGNDTSDVDTDASEETLAAVGNRKRTKITLTKNNTAKRPKKPRNLLTEDKHPTEINTDTSEATTGLNKTVGIKSVGAETAFEKKNNRNAKALDTDVKKPKLQKRKRRNKSIYSCDLCGKEYKSERYLKPHMSRHDPNMSKETIATLKKDADLEFEKKYNFEIKLLSKEEQKQRIEERKKNNSAHSCDVCGKDHTNERTLAAHKTSHHDPSLPVECDVCFYRFRSRQVLRKHQLEDRHRTIFTCNECGHVTRRRIYAKDHCLMHRGKTFACPYCDMKYDRQSSYYGHMRLQHPGENEACDECGETFTGKVGLLVHKRLRHKTNDNPNENFKCSVCEVTFLSAEALQRHLELSVGVPHAALWPCAACGDTCGSEPALAAHAAEKHPPEQRYCKECNKTFSDASSFALHVDRKHKNRRAAHVGRARRGVRGQHGRCVCEICGKVFMCMATLQYHMNGHLGLRPFQCSHCSKAFTHKTKLMFHMRVHTGEKPYQCEQCPLAFSFKSNLIRHENNVHLRVQAECKFCGKTMGAASLSLHVRAVHMNLGYVRRKRPRTKKPVRDAET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00155698;
90% Identity: iTF_00156528;
80% Identity: -