Basic Information

Insect: Archips xylosteana
Gene Symbol: -
Assembly: GCA_947563465.1
Location: OX387372.1:8400218-8440561[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.028 2 9.8 0.0 2 23 491 512 490 512 0.93

2 18 0.012 0.87 10.9 0.0 1 23 522 545 522 545 0.95

3 18 0.049 3.6 9.0 3.8 2 23 684 705 683 705 0.95

4 18 9.4 6.8e+02 1.8 1.8 1 23 717 741 717 742 0.88

5 18 0.0002 0.014 16.5 0.4 2 23 748 771 747 771 0.97

6 18 0.051 3.7 9.0 0.2 1 23 777 799 777 799 0.93

7 18 0.003 0.22 12.8 3.3 1 23 805 827 805 827 0.98

8 18 0.18 13 7.2 0.1 1 23 935 957 935 957 0.96

9 18 2.8 2.1e+02 3.5 7.2 1 23 964 986 964 986 0.95

10 18 0.0019 0.14 13.4 1.8 1 23 1026 1049 1026 1049 0.95

11 18 0.00081 0.059 14.6 1.8 1 23 1056 1079 1056 1079 0.98

12 18 0.019 1.4 10.3 0.2 2 23 1101 1123 1100 1123 0.96

13 18 0.012 0.85 11.0 1.5 1 23 1134 1156 1134 1156 0.98

14 18 0.049 3.5 9.0 1.9 3 23 1162 1183 1161 1183 0.95

15 18 0.00036 0.026 15.7 0.8 1 23 1189 1211 1189 1211 0.98

16 18 0.017 1.2 10.5 0.6 1 23 1217 1239 1217 1239 0.96

17 18 0.00017 0.012 16.8 0.1 1 23 1245 1267 1245 1267 0.97

18 18 0.00015 0.011 17.0 1.0 2 23 1274 1296 1273 1296 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.028	2	9.8	0.0	2	23	491	512	490	512	0.93
2	18	0.012	0.87	10.9	0.0	1	23	522	545	522	545	0.95
3	18	0.049	3.6	9.0	3.8	2	23	684	705	683	705	0.95
4	18	9.4	6.8e+02	1.8	1.8	1	23	717	741	717	742	0.88
5	18	0.0002	0.014	16.5	0.4	2	23	748	771	747	771	0.97
6	18	0.051	3.7	9.0	0.2	1	23	777	799	777	799	0.93
7	18	0.003	0.22	12.8	3.3	1	23	805	827	805	827	0.98
8	18	0.18	13	7.2	0.1	1	23	935	957	935	957	0.96
9	18	2.8	2.1e+02	3.5	7.2	1	23	964	986	964	986	0.95
10	18	0.0019	0.14	13.4	1.8	1	23	1026	1049	1026	1049	0.95
11	18	0.00081	0.059	14.6	1.8	1	23	1056	1079	1056	1079	0.98
12	18	0.019	1.4	10.3	0.2	2	23	1101	1123	1100	1123	0.96
13	18	0.012	0.85	11.0	1.5	1	23	1134	1156	1134	1156	0.98
14	18	0.049	3.5	9.0	1.9	3	23	1162	1183	1161	1183	0.95
15	18	0.00036	0.026	15.7	0.8	1	23	1189	1211	1189	1211	0.98
16	18	0.017	1.2	10.5	0.6	1	23	1217	1239	1217	1239	0.96
17	18	0.00017	0.012	16.8	0.1	1	23	1245	1267	1245	1267	0.97
18	18	0.00015	0.011	17.0	1.0	2	23	1274	1296	1273	1296	0.95

Sequence Information

Coding Sequence: ATGATGGCGGAGCAGCCTCCGCTCATCCTGTGCATGGAGAATGCAGCGGGCGAGGAGGTATCCCTCAGCATCCAGCCCCATGACAACTTCCAGTCGTTCCTGCTCAAAGCCAATGCTTTACTTGGTTACGAAGTAGATCTTAATTCAGTAACCAGAAACCAACCAGTAGCTCTAACCGACAACATCTACCAATTCCTCATGAACGCTGAAAATAACATGCTAGAGTACCCACAACTTGGTCAAAGTTTTGATCAAATGTTGGAGCCAAATAACGACGATCTAGTGTACGTACTAGACGACGGCACGCAAATCAAAGCTTCACAAATACACTTCGACAATGAAGATCAGCCTATAGACTTTACTGCTGAAAAAATACCGTTCATCAAATATATTGATGATGGTATTGATGAAATAGAAGAACCAAAGGATGTTAGCACTAAAATGATCAACATTGTTGAAAGTCCAGTGTCCAAATGGTCAAACTCCAGTCCTAAGAAGGGATTTGCTAATAGTCTACCATTTAAACTCGTTAGCAATAATACTTCTGGATTCGAAGCACAGTTCACTAAATACCTAGAAAACAACAGTGACAAAACTTTTACACCTCTTAACACTGTGACGACTAGAAACAAATCGCCCAGAAGTTTGATCAAAGATAACTATAAGAAATATGACGAAAACACTTATAGTAAAACTGACAATTATACTTTAACCAGAGATGAAGTTTTAAATATGTTCAAAGATCCACCAATCGCTATACCCTATGAGAGTTACCAATACAATGATAAGCGGAGGCATGTACGCAAAACTGACCCGTCACGCCCAGTATATAAAGCTTGGAATGCCAAGCCCATGCCGTACGTTGATGTCGACGGGACTCTAATAGGACAAAACGAGAGCCAAAACTGTTTTATTTGCGAAAAGTTTGTCGATAACAACATGGAGAAACTGTACTTATTTGACAACGAAGATCAAAGGTTACACAGATCATCGCCCCCTAAAAAGTTATCGACGCAACTCAAAATCATCTGCGATCATTGTTTGAATGAAAACTTCAAGCCATCAAGAATGAAGAGTCCCAATAAAAATCTAGATCCCGACGAATATCTAGTTATCAGAAATAATCAGCAGTACATATTCCAGAAAACGAATTCGATTGATTTCAAAAATATCAAAAGTGGCTTCGTTAATATTGGTGAAGCGACAGCTATCATAGATAAAATAGAGTCCAAGATGCTGAAATCTAGTGCCAAACAATTGGATTTTGTTAAAGTTGAAATTGGTTCAGATGGTGAAATAATAAACAAGGACAACGTAATTAAAGATGAGAAGGAGGATTCTAGTGATGTGGAGATCATAGAGACGGCACCGGAGATAGACGATGTCATAAACAATTTGGATGAGGCTGATGAGGAAGTGAAAGAGTTTTTGGGAATGTATCAGCGCGATAGCAATGCTATTAGTGAATTGAAATGCAGATTTTGCGAGCGTGTTTTCGCCGATTTGGCGGAGTTGATGGAGCACGGTGACGTGCATAGACATCTTTTGGAAGATGGCGAGGTCTTCCCATGCCCTTTGTGCAACTACGGATATGCTGACTACAAATGGCTAAAAGGTCACCTGAAAGCAGCTCACGACTACTCCACGAAAACAAAAGAAAACGAGACTGATAAAAAAGTTACAGAAACAACTTCTCCTGCGGCATCGCCGGTGGCCAAGCGTACCAGAAGTAACAAGAAATGCGAGAAAGACCAAAAAGATGAACCTGCTAAAGTCGATGATGGAAAGACCTCAGAAGTTTCCGAATCAACCAATGGTACTATGGTGATCAAAACGGAGGTGAAGCAAGAAGCGTTAGACACGAGTGACGAAGAAGCCATCTGGATTGTCCACACCGCTGATGATGAGTCTGCCGATCAGCTCCATAACTTGCTGCAGAGAGCCCAAGGCAGGCCCAGACAAAGCATGGATGATTCTAATAACGGCTTACTTGTTGAGAGGACACGCAAGAAGAAACCTTCGGAACTGACTTCGGATCCGCAGATAGTGACTTGCCATAACTGCAATGAGTCCTTCACATCCAAAGTTCGATTGAAGTTCCATATGCAATTCCACGAGAATACATCGATGCGTACAGCATCAGGCCAGTTCACGTGCACCGAGTGTGCTGGCGAGGAATTCGCTACGGAGACGGAGTTATTCGACCACCTCCACTTTAGACACCATAAGCAGCGCCGCTGGCAGTGCCCAGTCCAGGGTTGCGGGAAGACCTTCTTCCTCAGGGCGACACTGACGAAGCACAGCCGCACGCACACAGACACGCGCCGCTACGTGTGTGGAACATGCGGCAAGAGGTTTCTGGACAAACAGACCCTGGACGAACATGGGGTCACGCATTTACAGATCAAGCCGTTTCAATGCCACATCTGCCTGAAGCAACTGACGCGTCGCTCTCGCTTGCGCATGCACTTACGCGCGCACGAGGAGGCGCTCTGTCCCGCTCTAGTGCCTGTCTGTGCCGCCTGCCATCGCGCCTTCGCCGACGTCGCACAGGCGCAGGAGCACGTAACGAAATCTACGGAATGCATCGAGATCTTCGCCCGGGAAATGAAGGAGGAGGCCGAAGAGCCAACAGCCGTGCTCTCGCCCACTAGTGGGCTTGTGCGGCCCACCACTAGGAAACCTGACAGCGCAAACGCTCTGATAGCGTGCGAGGCGGCGTGCGCGGGCGCGGCGGCCATGCTGGCGCCGCTGTCTGCCGCGCTGCGTCGCGCCGTGCGCATAGTGCAAGTCGAGAAGGCCTTCCGCTGCGAGTACTGCGAggaCGTGTTCTACCTAGAAGAAGCATTGAACAACCACCGCGGTATCCACAAAGGTGTCAAGAATCCTTTCACCTGTCACATCTGCAAAGTCAGTTTCGCTACTTACTCCAGATGCACCACGCACAAGACTACCCACGGTTTCTACAAGCGCTCGCTCGCCGATGCCAAGAAGCAGGACAAGCCGCTCAAAGAGGAAGCGGGGCCCTCTGCCAACGGGATCCTGGGCTACGGAGGGTTCCCCGTCGTTAAACACTTTTTGTGCGAGGATTGCGGTCGCTCATACTTGCACTGGACTTATCTGCAAGTGCATAGGCGCATGAAACACGCCAACGAGAATTATATTTATAAATGTAATCACTGCGATCTGACCTTCCCGAACAGTTGGAGTGTGGCATATCACAGAAAGAAGGTGCACGGCAAGAATGGGTTGGACGAAGGGAACGGCGCCACGAAAATGGCTAAAGACGATTACAGGATCCCTTGCCGCGACTGCGAGGAAGTGCTGCCAAACAAAACTGCGCTCTATAAACACAGGAAGAAGGAACATAGTGATTTGTCCTTACGAATCAACAGTGTGCACGTTTGCCACGTGTGCAGCAAGCGTTATTTGTCTCGCGCGGGGCTGGAGGCGCATGCGCGGACACACAATACGCGAGCCGCTTGCGCACACTGCGGGGATAGCTTCGCGCATGCGCAGGATCTGCACCAGCATCTCAAGGAAGTGCACGGGCACGAGCTAGATTTCCACTGCAACGTGTGCTCCATGCGGTTCGGGTCGCGAGGCGCGCTGTCGGCGCACATGCTGACGCACGCGGCGGCGCGCGCGCACGCGTGCGCGGTGTGCGGCCACGCGTGCCGCACGCCCGCCGTGCTGGCCGAGCACGCGCGCACGCACACCGGCGAACGGCCCTTCCCCTGCGACGTGTGCGGCGTCGCCTTCAGGAGGTCGACGGCGATGCGGAATCACCGTCTGATCCACACGGGGGTTCGCGCTTGGCCGTGTGCTCGCTgccccaagcggttccgcgtacgctcggatctcaacacgcatcggcggcggaagcaccccgccggcttggctgtcatagagATAGATGGTCTGAACCCGGGGCCTGAGCAGGTGATGGAGTGTCTCGCAGCCAACAACATACCGCATGAAAACGTCGTCGAAATCACCAAGATGTCTTTTGCTAAGGGTACGTCGAGCGTGATCCCTGACAGTGCGCGCGCGCTGTCTTTGGTGTCGGCGGCGCGTGCGCCGGTCGCTTGGGGACGCCCGCCTGCTCTCAACAACGCAGTGGCGGCGTGGGGCTCCCCAGAGCCGGCGCGGCGCGGGCGCGGCATCGCGCGGCACCCGCGCCGCCCCGCCATACTGCAGCGCGGCGCGTACCCAATTAACACACAGCACGAGGAGCTGACAGAGATAAACGTACAGATGCTGCTGCGTGACAGCACTCTCGACCGCCAGGGGGCACTGCCGCTCGACGACTCGCTGCTGCTCGAATAG
Protein Sequence: MMAEQPPLILCMENAAGEEVSLSIQPHDNFQSFLLKANALLGYEVDLNSVTRNQPVALTDNIYQFLMNAENNMLEYPQLGQSFDQMLEPNNDDLVYVLDDGTQIKASQIHFDNEDQPIDFTAEKIPFIKYIDDGIDEIEEPKDVSTKMINIVESPVSKWSNSSPKKGFANSLPFKLVSNNTSGFEAQFTKYLENNSDKTFTPLNTVTTRNKSPRSLIKDNYKKYDENTYSKTDNYTLTRDEVLNMFKDPPIAIPYESYQYNDKRRHVRKTDPSRPVYKAWNAKPMPYVDVDGTLIGQNESQNCFICEKFVDNNMEKLYLFDNEDQRLHRSSPPKKLSTQLKIICDHCLNENFKPSRMKSPNKNLDPDEYLVIRNNQQYIFQKTNSIDFKNIKSGFVNIGEATAIIDKIESKMLKSSAKQLDFVKVEIGSDGEIINKDNVIKDEKEDSSDVEIIETAPEIDDVINNLDEADEEVKEFLGMYQRDSNAISELKCRFCERVFADLAELMEHGDVHRHLLEDGEVFPCPLCNYGYADYKWLKGHLKAAHDYSTKTKENETDKKVTETTSPAASPVAKRTRSNKKCEKDQKDEPAKVDDGKTSEVSESTNGTMVIKTEVKQEALDTSDEEAIWIVHTADDESADQLHNLLQRAQGRPRQSMDDSNNGLLVERTRKKKPSELTSDPQIVTCHNCNESFTSKVRLKFHMQFHENTSMRTASGQFTCTECAGEEFATETELFDHLHFRHHKQRRWQCPVQGCGKTFFLRATLTKHSRTHTDTRRYVCGTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEALCPALVPVCAACHRAFADVAQAQEHVTKSTECIEIFAREMKEEAEEPTAVLSPTSGLVRPTTRKPDSANALIACEAACAGAAAMLAPLSAALRRAVRIVQVEKAFRCEYCEDVFYLEEALNNHRGIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQDKPLKEEAGPSANGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENYIYKCNHCDLTFPNSWSVAYHRKKVHGKNGLDEGNGATKMAKDDYRIPCRDCEEVLPNKTALYKHRKKEHSDLSLRINSVHVCHVCSKRYLSRAGLEAHARTHNTRAACAHCGDSFAHAQDLHQHLKEVHGHELDFHCNVCSMRFGSRGALSAHMLTHAAARAHACAVCGHACRTPAVLAEHARTHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRAWPCARCPKRFRVRSDLNTHRRRKHPAGLAVIEIDGLNPGPEQVMECLAANNIPHENVVEITKMSFAKGTSSVIPDSARALSLVSAARAPVAWGRPPALNNAVAAWGSPEPARRGRGIARHPRRPAILQRGAYPINTQHEELTEINVQMLLRDSTLDRQGALPLDDSLLLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00342501; iTF_00462683;
90% Identity: -
80% Identity: -